POPTR_0006s05320 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0006s05320 T004650_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.795 0.940
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.767 0.920
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.684 0.780
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.684 0.780
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.684 0.780
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.680 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s05320.1 AP2 28 79

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA022464 Oryza indica BGIOSGA022464 N 0.000
Bo6g124000 Brassica oleracea Bo6g124000 N 0.000
Bra035129 Brassica rapa Bra035129 N 0.000
BRADI1G45517 Brachypodium distachyon BRADI1G45517 N 0.000
Carubv10014420m.g Capsella rubella Carubv10014420m.g N 0.000
F775_06135 Aegilops tauschii F775_06135 N 0.000
GRMZM2G106673 Zea mays GRMZM2G106673 N 0.000
GRMZM2G173321 Zea mays GRMZM2G173321 N 0.000
LPERR06G05590 Leersia perrieri LPERR06G05590 N 0.000
Lus10014044.g Linum usitatissimum Lus10014044.g N 0.000
mgf008645m Mimulus guttatus mgf008645m N 0.000
MLOC_76431 Hordeum vulgare MLOC_76431 N 0.000
MTR_3g101520 Medicago truncatula MTR_3g101520 N 0.000
OB06G15600 Oryza brachyantha OB06G15600 N 0.000
OGLUM06G06330 Oryza glumaepatula OGLUM06G06330 N 0.000
OLONG_013315 Oryza longistaminata OLONG_013315 N 0.000
OMERI06G07230 Oryza meridionalis OMERI06G07230 N 0.000
ONIVA06G07020 Oryza nivara ONIVA06G07020 N 0.000
ORGLA06G0055700 Oryza glaberrima ORGLA06G0055700 N 0.000
ORUFI06G06290 Oryza rufipogon ORUFI06G06290 N 0.000
OS06G0194400 Oryza sativa OS06G0194400 N 0.000
Pavir.Fb00845 Panicum virgatum Pavir.Fb00845 N 0.000
Pavir.J28012 Panicum virgatum Pavir.J28012 N 0.000
PRUPE_ppb024440mg Prunus persica PRUPE_ppb024440mg N 0.000
Sb07g006170 Sorghum bicolor Sb07g006170 N 0.000
Si014404m.g Setaria italica Si014404m.g N 0.000
Traes_4AL_1D254E0E4 Triticum aestivum Traes_4AL_1D254E0E4 N 0.000
Traes_7AS_A4B5D1816 Triticum aestivum Traes_7AS_A4B5D1816 N 0.000
Traes_7BS_9D1E05CB7 Triticum aestivum Traes_7BS_9D1E05CB7 N 0.000
Traes_7DS_C57224E6E Triticum aestivum Traes_7DS_C57224E6E N 0.000
TRIUR3_03303 Triticum urartu TRIUR3_03303 N 0.000