Solyc01g065980.2 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc01g065980.2 T005399_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.738 0.837
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.731 0.816
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.731 0.816
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.729 0.776
HRE1
M06595_2.00 		Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHKVNDN		 Dap-seq
OMalley et al.(2016)
ERF73_col_a 		0.727 0.816
HRE1
M06596_2.00 		Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY
RYGGCGGCGGHGRNDKHDRND		 Dap-seq
OMalley et al.(2016)
ERF73_colamp_a 		0.727 0.816
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.727 0.755
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.727 0.755
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.726 0.776
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.724 0.796
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.721 0.755
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.721 0.755
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.721 0.755
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.713 0.755
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.713 0.755
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.710 0.796
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.705 0.694
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.699 0.755
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.699 0.755
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.699 0.755
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.698 0.735
RAP2-3
M01050_2.00 		Arabidopsis thaliana
CGCCGCCR
YGGCGGCG		 PBM
Sullivan et al.(2014)
pTH8811 		0.698 0.837
RAP2-3
M00847_2.00 		Arabidopsis thaliana
NMGCCGCCDN
NHGGCGGCKN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.3 		0.698 0.837
ERF091
M06638_2.00 		Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN		 Dap-seq
OMalley et al.(2016)
AT4G18450_col_a 		0.696 0.776
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.693 0.653
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.693 0.776
Q2TN80_WHEAT
M09715_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_02 		0.689 0.735
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.687 0.714
0100010458
M01644_2.00 		Ostreococcus tauri
MGCCGSCR
YGSCGGCK		 PBM
Weirauch et al.(2014)
pTH9447 		0.680 0.714
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g065980.2.1 AP2 90 141

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

946 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30072.m000986 Ricinus communis 30072.m000986 N
Aquca_027_00267 Aquilegia coerulea Aquca_027_00267 N
MYB3 Arabidopsis thaliana AT1G22640 D
ATMYBL2 Arabidopsis thaliana AT1G71030 N
MYB15 Arabidopsis thaliana AT3G23250 D
ATMYB48 Arabidopsis thaliana AT3G46130 I
WER Arabidopsis thaliana AT5G14750 D
MYB59 Arabidopsis thaliana AT5G59780 D
BGIOSGA002691 Oryza indica BGIOSGA002691 N
Bo2g070770 Brassica oleracea Bo2g070770 N
Bo6g112670 Brassica oleracea Bo6g112670 N
Bostr.10273s0244 Boechera stricta Bostr.10273s0244 N
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I
Bra007957 Brassica rapa Bra007957 N
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I
Carubv10027237m.g Capsella rubella Carubv10027237m.g N
cassava13590.valid.m1 Manihot esculenta cassava13590.valid.m1 N
cassava29437.valid.m1 Manihot esculenta cassava29437.valid.m1 N
Ca_11427 Cicer arietinum Ca_11427 N
Ca_16710 Cicer arietinum Ca_16710 N
Cucsa.213500 Cucumis sativus Cucsa.213500 I
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N
ATMYBL2 Arabidopsis lyrata fgenesh2_kg.2__1365__AT1G71030.1 N
GLYMA03G41965 Glycine max GLYMA03G41965 N
GLYMA13G40830 Glycine max GLYMA13G40830 I
GLYMA15G04620 Glycine max GLYMA15G04620 I
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I
Gorai.011G122800 Gossypium raimondii Gorai.011G122800 I
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I
GRMZM2G130149 Zea mays GRMZM2G130149 I
LjT39N06.160.nd Lotus japonicus LjT39N06.160.nd N
Lus10040861.g Linum usitatissimum Lus10040861.g N
mgf018170m Mimulus guttatus mgf018170m N
MLOC_52439 Hordeum vulgare MLOC_52439 I
MLOC_78504 Hordeum vulgare MLOC_78504 I
MTR_4g063100 Medicago truncatula MTR_4g063100 I
OBART01G01770 Oryza barthii OBART01G01770 N
OBART01G27550 Oryza barthii OBART01G27550 N
OGLUM01G01950 Oryza glumaepatula OGLUM01G01950 N
OMERI01G01270 Oryza meridionalis OMERI01G01270 N
ONIVA01G01950 Oryza nivara ONIVA01G01950 N
OPUNC01G01540 Oryza punctata OPUNC01G01540 N
orange1.1g031483m.g Citrus sinensis orange1.1g031483m.g N
OS01G0127450 Oryza sativa OS01G0127450 N
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I
Pavir.J08441 Panicum virgatum Pavir.J08441 I
Pavir.J11500 Panicum virgatum Pavir.J11500 I
Pavir.J33560 Panicum virgatum Pavir.J33560 I
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I
PGSC0003DMG400030397 Solanum tuberosum PGSC0003DMG400030397 N
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N
PK07876.1 Cannabis sativa PK07876.1 N
PK18646.1 Cannabis sativa PK18646.1 N
PK22178.1 Cannabis sativa PK22178.1 N
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I
SapurV1A.2099s0020 Salix purpurea SapurV1A.2099s0020 N
SapurV1A.2154s0020 Salix purpurea SapurV1A.2154s0020 N
Sb05g027370 Sorghum bicolor Sb05g027370 N
Sb08g018580 Sorghum bicolor Sb08g018580 I
Si023104m.g Setaria italica Si023104m.g I
Si026803m.g Setaria italica Si026803m.g I
Solyc06g005310.2 Solanum lycopersicum Solyc06g005310.2 N
Solyc06g075660.2 Solanum lycopersicum Solyc06g075660.2 N
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I
Thhalv10019036m.g Eutrema salsugineum Thhalv10019036m.g N
Thhalv10022197m.g Eutrema salsugineum Thhalv10022197m.g N
Traes_1BS_060C24872 Triticum aestivum Traes_1BS_060C24872 N
Traes_2AL_E2F8D46CE Triticum aestivum Traes_2AL_E2F8D46CE N
Traes_2DL_77F235694 Triticum aestivum Traes_2DL_77F235694 N
Traes_6BL_931C25F08 Triticum aestivum Traes_6BL_931C25F08 N
TRIUR3_12584 Triticum urartu TRIUR3_12584 N