CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc05g052410.1
(
Solanum lycopersicum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
Solyc05g052410.1
T005475_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH
DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.753
0.918
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.720
0.857
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.720
0.857
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.720
0.857
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.713
0.796
Q8H769_WHEAT
M09721_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1_01
0.712
0.837
PK08602.1
M01098_2.00
Cannabis sativa
NYCACCGCYN
NRGCGGTGRN
PBM
Lambert et al.(2019)
pTH11421
0.686
0.796
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc05g052410.1.1
AP2
72
123
CKYRGVRQRTWGKWVAEIREPHRGRRLWLGTFDTAIEAALAYDEAARAMYGP
Links
Other
AP2
family TFs
Other
Solanum lycopersicum
TFs
226 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_05965
Aegilops tauschii
F775_05965
N
LPERR11G05260
Leersia perrieri
LPERR11G05260
N
OB11G14640
Oryza brachyantha
OB11G14640
N
OBART11G05830
Oryza barthii
OBART11G05830
N
OGLUM09G19780
Oryza glumaepatula
OGLUM09G19780
N
OLONG_000013
Oryza longistaminata
OLONG_000013
N
OMERI11G04690
Oryza meridionalis
OMERI11G04690
N
ONIVA11G16350
Oryza nivara
ONIVA11G16350
N
OPUNC11G05820
Oryza punctata
OPUNC11G05820
N
OPUNC11G05830
Oryza punctata
OPUNC11G05830
N
ORGLA11G0053000
Oryza glaberrima
ORGLA11G0053000
N
ORUFI11G05730
Oryza rufipogon
ORUFI11G05730
N
OS11G0197600
Oryza sativa
OS11G0197600
N
Pavir.Ha01581
Panicum virgatum
Pavir.Ha01581
N
Sb05g006090
Sorghum bicolor
Sb05g006090
N
Si027380m.g
Setaria italica
Si027380m.g
N
Traes_4BS_E46925D04
Triticum aestivum
Traes_4BS_E46925D04
N
Traes_4DS_352C41430
Triticum aestivum
Traes_4DS_352C41430
N