Solyc05g052410.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc05g052410.1 T005475_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.753 0.918
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN

NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.720 0.857
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD

HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.720 0.857
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN

NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.720 0.857
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.713 0.796
Q8H769_WHEAT
M09721_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1_01
0.712 0.837
PK08602.1
M01098_2.00
Cannabis sativa
NYCACCGCYN

NRGCGGTGRN
PBM
Lambert et al.(2019)
pTH11421
0.686 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc05g052410.1.1 AP2 72 123

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_05965 Aegilops tauschii F775_05965 N
LPERR11G05260 Leersia perrieri LPERR11G05260 N
OB11G14640 Oryza brachyantha OB11G14640 N
OBART11G05830 Oryza barthii OBART11G05830 N
OGLUM09G19780 Oryza glumaepatula OGLUM09G19780 N
OLONG_000013 Oryza longistaminata OLONG_000013 N
OMERI11G04690 Oryza meridionalis OMERI11G04690 N
ONIVA11G16350 Oryza nivara ONIVA11G16350 N
OPUNC11G05820 Oryza punctata OPUNC11G05820 N
OPUNC11G05830 Oryza punctata OPUNC11G05830 N
ORGLA11G0053000 Oryza glaberrima ORGLA11G0053000 N
ORUFI11G05730 Oryza rufipogon ORUFI11G05730 N
OS11G0197600 Oryza sativa OS11G0197600 N
Pavir.Ha01581 Panicum virgatum Pavir.Ha01581 N
Sb05g006090 Sorghum bicolor Sb05g006090 N
Si027380m.g Setaria italica Si027380m.g N
Traes_4BS_E46925D04 Triticum aestivum Traes_4BS_E46925D04 N
Traes_4DS_352C41430 Triticum aestivum Traes_4DS_352C41430 N