Carubv10011955m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10011955m.g T007868_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.848 1.000
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.848 1.000
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.848 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011955m AP2 11 62

Links

Other AP2 family TFs
Other Capsella rubella TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R011917 Calypte anna Aan_R011917 I 0.000
ACUA004306 Anopheles culicifacies ACUA004306 I 0.000
ACUA026833 Anopheles culicifacies ACUA026833 I 0.000
ADAC001468 Anopheles darlingi ADAC001468 I 0.000
ALUE_0000848601 Ascaris lumbricoides ALUE_0000848601 I 0.000
ALUE_0001497801 Ascaris lumbricoides ALUE_0001497801 I 0.000
AMAM000848 Anopheles maculatus AMAM000848 I 0.000
ASIM_0001230001 Anisakis simplex ASIM_0001230001 I 0.000
BGIBMGA003233 Bombyx mori BGIBMGA003233 I 0.000
BGLB013824 Biomphalaria glabrata BGLB013824 I 0.000
CGI_10009720 Crassostrea gigas CGI_10009720 I 0.000
CGI_10016653 Crassostrea gigas CGI_10016653 I 0.000
CLEC007171 Cimex lectularius CLEC007171 I 0.000
Cmyd_10001740 Chelonia mydas Cmyd_10001740 I 0.000
Cmyd_10012400 Chelonia mydas Cmyd_10012400 I 0.000
DICVIV_04104 Dictyocaulus viviparus DICVIV_04104 N 0.000
ENSAMEG00000004660 Ailuropoda melanoleuca ENSAMEG00000004660 N 0.000
ENSAMEG00000004942 Ailuropoda melanoleuca ENSAMEG00000004942 I 0.000
DLX3 Bos taurus ENSBTAG00000017409 I 0.000
DBX1 Callithrix jacchus ENSCJAG00000006734 I 0.000
PRRX2 Cavia porcellus ENSCPOG00000021821 I 0.000
ENSCSAVG00000000940 Ciona savignyi ENSCSAVG00000000940 I 0.000
Dbx1 Dipodomys ordii ENSDORG00000009286 N 0.000
DBX1 Echinops telfairi ENSETEG00000017576 N 0.000
ENSFCAG00000029037 Felis catus ENSFCAG00000029037 I 0.000
HESX1 Homo sapiens ENSG00000163666 D 0.000
LHX6 Gorilla gorilla ENSGGOG00000008310 I 0.000
DBX1 Gorilla gorilla ENSGGOG00000014848 N 0.000
ENSLACG00000001487 Latimeria chalumnae ENSLACG00000001487 I 0.000
DBX1 Microcebus murinus ENSMICG00000017111 N 0.000
ENSNLEG00000017811 Nomascus leucogenys ENSNLEG00000017811 N 0.000
DBX1 Ochotona princeps ENSOPRG00000012954 N 0.000
ENSP00000360811-D1 Bos grunniens ENSP00000360811-D1 I 0.000
DBX1 Procavia capensis ENSPCAG00000004905 N 0.000
ENSPPYG00000003422 Pongo abelii ENSPPYG00000003422 N 0.000
ENSPSIG00000014030 Pelodiscus sinensis ENSPSIG00000014030 I 0.000
DBX1 Pan troglodytes ENSPTRG00000003437 N 0.000
ENSTSYG00000000516 Tarsius syrichta ENSTSYG00000000516 I 0.000
ENSTSYG00000014450 Tarsius syrichta ENSTSYG00000014450 I 0.000
DBX1 Tursiops truncatus ENSTTRG00000000318 N 0.000
EVEC_0000357701 Enterobius vermicularis EVEC_0000357701 I 0.000
Gfo_R002825 Geospiza fortis Gfo_R002825 I 0.000
HDID_0000333701 Hymenolepis diminuta HDID_0000333701 N 0.000
HNAJ_0000529701 Hymenolepis nana HNAJ_0000529701 N 0.000
HPBE_0000873701 Heligmosomoides bakeri HPBE_0000873701 I 0.000
HPLM_0000971301 Haemonchus placei HPLM_0000971301 I 0.000
HPLM_0001894101 Haemonchus placei HPLM_0001894101 I 0.000
L596_g8967 Steinernema carpocapsae L596_g8967 I 0.000
LDEC008146 Leptinotarsa decemlineata LDEC008146 I 0.000
maker-nMf.1.1.scaf02843-snap-gene-0.9 Meloidogyne floridensis maker-nMf.1.1.scaf02843-snap-gene-0.9 N 0.000
MCINX007054 Melitaea cinxia MCINX007054 I 0.000
MCINX008871 Melitaea cinxia MCINX008871 I 0.000
MCOS_0000004601 Mesocestoides corti MCOS_0000004601 I 0.000
NBR_0000705501 Nippostrongylus brasiliensis NBR_0000705501 I 0.000
nLs.2.1.2.g05836 Litomosoides sigmodontis nLs.2.1.2.g05836 I 0.000
nRc.2.0.1.g35501 Romanomermis culicivorax nRc.2.0.1.g35501 I 0.000
OESDEN_01216 Oesophagostomum dentatum OESDEN_01216 I 0.000
Ogr00185 Ophisaurus gracilis Ogr00185 N 0.000
Ogr03859 Ophisaurus gracilis Ogr03859 I 0.000
PEQ_0001388201 Parascaris equorum PEQ_0001388201 I 0.000
SBAD_0000602401 Soboliphyme baturini SBAD_0000602401 I 0.000
scaffold251-EXSNAP2012.22 Pristionchus exspectatus scaffold251-EXSNAP2012.22 I 0.000
T265_00628 Opisthorchis viverrini T265_00628 I 0.000
T265_02852 Opisthorchis viverrini T265_02852 I 0.000
TC000483 Tribolium castaneum TC000483 I 0.000
TELCIR_07728 Teladorsagia circumcincta TELCIR_07728 I 0.000
tetur02g13510 Tetranychus urticae tetur02g13510 I 0.000
tetur14g02510 Tetranychus urticae tetur14g02510 I 0.000
TTAC_0001021101 Hydatigera taeniaeformis TTAC_0001021101 N 0.000