Ogr03010 (Ophisaurus gracilis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Ogr03010 T015925_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.771 0.941
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.771 0.941
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.663 0.659
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.619 0.706
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.619 0.706
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.619 0.706
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.619 0.706
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.479 0.576
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr03010 ARID/BRIGHT 173 258

Links

Other ARID/BRIGHT family TFs
Other Ophisaurus gracilis TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29596.m000719 Ricinus communis 29596.m000719 N
29838.m001723 Ricinus communis 29838.m001723 N
Aquca_007_00525 Aquilegia coerulea Aquca_007_00525 N
GATA18 Oryza indica BGIOSGA010036 N
Bostr.15774s0100 Boechera stricta Bostr.15774s0100 N
BRADI1G12330 Brachypodium distachyon BRADI1G12330 N
cassava1723.valid.m1 Manihot esculenta cassava1723.valid.m1 N
cassava2865.m1 Manihot esculenta cassava2865.m1 N
cassava6877.valid.m1 Manihot esculenta cassava6877.valid.m1 N
Ca_01470 Cicer arietinum Ca_01470 N
Ciclev10001533m.g Citrus clementina Ciclev10001533m.g N
Ciclev10028671m.g Citrus clementina Ciclev10028671m.g N
Cla022485 Citrullus lanatus Cla022485 N
Cucsa.160520 Cucumis sativus Cucsa.160520 N
Eucgr.F00433 Eucalyptus grandis Eucgr.F00433 N
evm.TU.supercontig_21.35 Carica papaya evm.TU.supercontig_21.35 N
F775_05698 Aegilops tauschii F775_05698 N
F775_32334 Aegilops tauschii F775_32334 N
gene26538-v1.0-hybrid Fragaria vesca gene26538-v1.0-hybrid N
GLYMA04G10340 Glycine max GLYMA04G10340 N
GLYMA06G10290 Glycine max GLYMA06G10290 N
Gorai.002G138300 Gossypium raimondii Gorai.002G138300 N
Gorai.005G226000 Gossypium raimondii Gorai.005G226000 N
Gorai.010G033400 Gossypium raimondii Gorai.010G033400 N
LjT45A20.140.nd Lotus japonicus LjT45A20.140.nd N
LPERR03G24620 Leersia perrieri LPERR03G24620 N
MDP0000192617 Malus domestica MDP0000192617 N
mgf001782m Mimulus guttatus mgf001782m N
MLOC_57142 Hordeum vulgare MLOC_57142 N
MLOC_6017 Hordeum vulgare MLOC_6017 N
MTR_3g100040 Medicago truncatula MTR_3g100040 N
OBART03G29860 Oryza barthii OBART03G29860 N
OGLUM03G30120 Oryza glumaepatula OGLUM03G30120 N
OLONG_006862 Oryza longistaminata OLONG_006862 N
OMERI03G26130 Oryza meridionalis OMERI03G26130 N
ONIVA03G31130 Oryza nivara ONIVA03G31130 N
OPUNC03G27170 Oryza punctata OPUNC03G27170 N
orange1.1g017195m.g Citrus sinensis orange1.1g017195m.g N
orange1.1g017348m.g Citrus sinensis orange1.1g017348m.g N
ORGLA01G0401200 Oryza glaberrima ORGLA01G0401200 N
ORUFI03G31080 Oryza rufipogon ORUFI03G31080 N
GATA18 Oryza sativa OS03G0684000 N
Pavir.Ib04266 Panicum virgatum Pavir.Ib04266 N
Pavir.J38243 Panicum virgatum Pavir.J38243 N
PGSC0003DMG400009353 Solanum tuberosum PGSC0003DMG400009353 N
PGSC0003DMG400010684 Solanum tuberosum PGSC0003DMG400010684 N
PK22222.1 Cannabis sativa PK22222.1 N
Pm004389 Prunus mume Pm004389 N
XM_002302327.1 Populus trichocarpa POPTR_0002s11140 N
POPTR_0005s19550 Populus trichocarpa POPTR_0005s19550 N
POPTR_0007s03120 Populus trichocarpa POPTR_0007s03120 N
POPTR_0017s06970 Populus trichocarpa POPTR_0017s06970 N
PRUPE_ppa008377mg Prunus persica PRUPE_ppa008377mg N
SapurV1A.0004s0640 Salix purpurea SapurV1A.0004s0640 N
SapurV1A.0187s0160 Salix purpurea SapurV1A.0187s0160 N
SapurV1A.1216s0090 Salix purpurea SapurV1A.1216s0090 N
Sb01g011840 Sorghum bicolor Sb01g011840 N
Si036492m.g Setaria italica Si036492m.g N
Solyc01g106040.2 Solanum lycopersicum Solyc01g106040.2 N
TCM_007358 Theobroma cacao TCM_007358 N
TCM_034531 Theobroma cacao TCM_034531 N
Traes_4AL_B6992AAA6 Triticum aestivum Traes_4AL_B6992AAA6 N
Traes_4BS_ACD70539F Triticum aestivum Traes_4BS_ACD70539F N
Traes_4DS_AFCEDDE67 Triticum aestivum Traes_4DS_AFCEDDE67 N
TRIUR3_15386 Triticum urartu TRIUR3_15386 N
TRIUR3_23258 Triticum urartu TRIUR3_23258 N
VIT_18s0001g07730 Vitis vinifera VIT_18s0001g07730 N