BPC2 (Arabidopsis lyrata)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 fgenesh2_kg.1__1602__AT1G14685.1 T024599_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC1
M06715_2.00 		Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA
TCTCTCTCTCTCTCTCTCTCTCTC		 Dap-seq
OMalley et al.(2016)
BPC1_col_a 		0.700 0.700
BPC1
M06716_2.00 		Arabidopsis thaliana
RAGAGAGAGARAGAR
YTCTYTCTCTCTCTY		 Dap-seq
OMalley et al.(2016)
BPC1_colamp_a 		0.700 0.700
BPC1
M09775_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BPC1_Q2 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__1602__AT1G14685.1 BBR 1 277

Links

Other BBR family TFs
Other Arabidopsis lyrata TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BPC2 Arabidopsis thaliana AT1G14685 N 0.970
Bo5g019930 Brassica oleracea Bo5g019930 N 0.752
Bo8g066170 Brassica oleracea Bo8g066170 N 0.795
Bo8g106640 Brassica oleracea Bo8g106640 N 0.742
Bostr.0124s0194 Boechera stricta Bostr.0124s0194 N 0.859
Bra016686 Brassica rapa Bra016686 N 0.800
Bra026196 Brassica rapa Bra026196 N 0.733
Bra026813 Brassica rapa Bra026813 N 0.733
Cagra.3501s0027 Capsella grandiflora Cagra.3501s0027 N 0.856
Carubv10009978m.g Capsella rubella Carubv10009978m.g N 0.878
C1orf35 Otolemur garnettii ENSOGAG00000010978 I 1.000
RGD1304587 Rattus norvegicus ENSRNOG00000002944 I 1.000
OMERI10G00680 Oryza meridionalis OMERI10G00680 I 0.786
Thhalv10008428m.g Eutrema salsugineum Thhalv10008428m.g N 0.811
Traes_4BL_011308A76 Triticum aestivum Traes_4BL_011308A76 I 0.798