Pavir.J23280 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J23280 T028607_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J23280.1.p BED ZF 64 117

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL008720 Aedes aegypti AAEL008720 I
AAEL010926 Aedes aegypti AAEL010926 I
AALB009948 Anopheles albimanus AALB009948 I
Aan_R005414 Calypte anna Aan_R005414 I
AARA006325 Anopheles arabiensis AARA006325 I
AATE011966 Anopheles atroparvus AATE011966 I
ACEP12187 Atta cephalotes ACEP12187 I
ACHR000964 Anopheles christyi ACHR000964 I
ACOM041693 Anopheles coluzzii ACOM041693 I
ACUA004576 Anopheles culicifacies ACUA004576 I
ACYPI002973 Acyrthosiphon pisum ACYPI002973 I
ADAC008363 Anopheles darlingi ADAC008363 I
ADIR000346 Anopheles dirus ADIR000346 I
AEPI007010 Anopheles epiroticus AEPI007010 I
AFAF013563 Anopheles farauti AFAF013563 I
Afo_R000461 Aptenodytes forsteri Afo_R000461 I
AFUN006147 Anopheles funestus AFUN006147 I
AGAP010512 Anopheles gambiae AGAP010512 I
AMIN001258 Anopheles minimus AMIN001258 I
ANCDUO_04431 Ancylostoma duodenale ANCDUO_04431 I
AQUA001308 Anopheles quadriannulatus AQUA001308 I
ASIS007770 Anopheles sinensis ASIS007770 I
ASIS013674 Anopheles sinensis ASIS013674 N
ASTEI07120 Anopheles stephensi ASTEI07120 I
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I
Bcin09g06140 Botrytis cinerea Bcin09g06140 I
BGHDH14_bgh04421 Blumeria graminis BGHDH14_bgh04421 I
BGIBMGA001384 Bombyx mori BGIBMGA001384 I
BGLB003854 Biomphalaria glabrata BGLB003854 I
Brh_R011000 Buceros rhinoceros Brh_R011000 I
BXY_0217000 Bursaphelenchus xylophilus BXY_0217000 I
CAGL0I10769g Candida glabrata CAGL0I10769g I
CANTEDRAFT_132918 Candida tenuis CANTEDRAFT_132918 I
CapteG221100 Capitella teleta CapteG221100 I
CFIO01_12657 Colletotrichum fioriniae CFIO01_12657 I
Cflo_11261--XP_001120126.1_APIME Camponotus floridanus Cflo_11261--XP_001120126.1_APIME I
CGI_10019446 Crassostrea gigas CGI_10019446 I
CH063_12904 Colletotrichum higginsianum CH063_12904 I
CJA08385 Caenorhabditis japonica CJA08385 I
CLEC013390 Cimex lectularius CLEC013390 I
Cmyd_10009988 Chelonia mydas Cmyd_10009988 I
Cob_05053 Colletotrichum orbiculare Cob_05053 I
CPIJ008335 Culex quinquefasciatus CPIJ008335 I
CpipJ_CPIJ008335 Culex pipiens CpipJ_CPIJ008335 I
CSUB01_05290 Colletotrichum sublineola CSUB01_05290 I
D917_02561 Trichinella nativa D917_02561 I
D918_07967 Trichuris suis D918_07967 I
DACRYDRAFT_57073 Dacryopinax sp DACRYDRAFT_57073 I
DAPPUDRAFT_8703 Daphnia pulex DAPPUDRAFT_8703 I
srfB Dictyostelium discoideum DDB_G0282835 I
DI09_81p70 Microsporidia sp DI09_81p70 I
E5Q_02524 Mixia osmundae E5Q_02524 I
ECPE_0001369301 Echinostoma caproni ECPE_0001369301 I
EFV60876 Trichinella spiralis EFV60876 I
EHEL_071720 Encephalitozoon hellem EHEL_071720 N
SRF Cavia porcellus ENSCPOG00000022327 I
ENSCSAVG00000008682 Ciona savignyi ENSCSAVG00000008682 I
SRF Erinaceus europaeus ENSEEUG00000005614 I
ENSFALG00000000878 Ficedula albicollis ENSFALG00000000878 I
SRF Gorilla gorilla ENSGGOG00000006293 I
ENSGMOG00000001540 Gadus morhua ENSGMOG00000001540 I
ENSMLUG00000008828 Myotis lucifugus ENSMLUG00000008828 I
ENSOARG00000005757 Ovis aries ENSOARG00000005757 I
ENSOPRG00000002509 Ochotona princeps ENSOPRG00000002509 I
ENSP00000265354 Macaca fascicularis ENSP00000265354 I
ENSPFOG00000018770 Poecilia formosa ENSPFOG00000018770 I
SRF Sorex araneus ENSSARG00000003401 I
SRF Taeniopygia guttata ENSTGUG00000004738 I
SRF Vicugna pacos ENSVPAG00000008912 I
EROM_071660 Encephalitozoon romaleae EROM_071660 N
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I
e_gw1.6.1281.1 Mucor circinelloides e_gw1.6.1281.1 I
bs Drosophila melanogaster FBgn0004101 D
GA17433 Drosophila pseudoobscura FBgn0077446 I
GF11392 Drosophila ananassae FBgn0088432 I
GG22961 Drosophila erecta FBgn0115118 I
GH20989 Drosophila grimshawi FBgn0128451 I
GI21322 Drosophila mojavensis FBgn0144052 I
GL20046 Drosophila persimilis FBgn0157643 I
GM11854 Drosophila sechellia FBgn0166795 I
GD11852 Drosophila simulans FBgn0183591 I
GJ21595 Drosophila virilis FBgn0208714 I
GK22205 Drosophila willistoni FBgn0224190 I
GE14398 Drosophila yakuba FBgn0232006 I
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I
fgenesh2_pg.scaffold_196000035 Branchiostoma floridae fgenesh2_pg.scaffold_196000035 I
fgenesh2_pg.scaffold_8000100 Branchiostoma floridae fgenesh2_pg.scaffold_8000100 I
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I
GB47234 Apis mellifera GB47234 I
Gfo_R009695 Geospiza fortis Gfo_R009695 I
GGTG_11623 Gaeumannomyces graminis GGTG_11623 I
GLOINDRAFT_82941 Rhizophagus irregularis GLOINDRAFT_82941 I
GLOTRDRAFT_42980 Gloeophyllum trabeum GLOTRDRAFT_42980 I
GLRG_02553 Colletotrichum graminicola GLRG_02553 I
gw1.27.105.1 Phycomyces blakesleeanus gw1.27.105.1 I
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I
gw1.5.917.1 Mucor circinelloides gw1.5.917.1 I
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I
H311_03229 Anncaliia algerae H311_03229 I
H311_03668 Anncaliia algerae H311_03668 I
Hba_21368 Heterorhabditis bacteriophora Hba_21368 I
HelroG137972 Helobdella robusta HelroG137972 I
HHAL001485-PA Halyomorpha halys HHAL001485-PA I
HMEL017830 Heliconius melpomene HMEL017830 I
HPLM_0000743501 Haemonchus placei HPLM_0000743501 I
Hsal_11632--XP_001120126.1_APIME Harpegnathos saltator Hsal_11632--XP_001120126.1_APIME I
ISCW019966 Ixodes scapularis ISCW019966 I
J056_002827 Wallemia ichthyophaga J056_002827 I
L596_g5274 Steinernema carpocapsae L596_g5274 I
L798_08800 Zootermopsis nevadensis L798_08800 I
L889_g24087 Steinernema feltiae L889_g24087 I
L892_g14520 Steinernema scapterisci L892_g14520 I
L893_g14743 Steinernema glaseri L893_g14743 I
L898_g9834 Steinernema monticolum L898_g9834 I
LCUP011663 Lucilia cuprina LCUP011663 I
LLOJ005985 Lutzomyia longipalpis LLOJ005985 I
LotgiG59850 Lottia gigantea LotgiG59850 I
M408DRAFT_79374 Serendipita vermifera M408DRAFT_79374 I
MAPG_02274 Magnaporthe poae MAPG_02274 I
MBM_07319 Marssonina brunnea MBM_07319 I
MCINX015635 Melitaea cinxia MCINX015635 I
MDOA002443 Musca domestica MDOA002443 I
MELLADRAFT_106990 Melampsora laricipopulina MELLADRAFT_106990 I
MESCA001358 Megaselia scalaris MESCA001358 I
MGG_02773 Magnaporthe oryzae MGG_02773 I
MVLG_04297 Microbotryum violaceum MVLG_04297 I
Myotis_brandtii_SRF_10026135 Myotis brandtii Myotis_brandtii_SRF_10026135 I
NCAS_0H03140 Naumovozyma castellii NCAS_0H03140 I
NCER_102270 Nosema ceranae NCER_102270 I
NV18787 Nasonia vitripennis NV18787 I
O9G_005180 Rozella allomycis O9G_005180 I
Ogr17973 Ophisaurus gracilis Ogr17973 I
OIDMADRAFT_123333 Oidiodendron maius OIDMADRAFT_123333 I
PAXRUDRAFT_829045 Paxillus rubicundulus PAXRUDRAFT_829045 I
PFICI_14124 Pestalotiopsis fici PFICI_14124 I
PIIN_00796 Piriformospora indica PIIN_00796 I
Ppa-unc-120 Pristionchus pacificus PPA14131 I
PredSwiss_CON2346.1 Pneumocystis carinii PredSwiss_CON2346.1 I
PSEUBRA_SCAF3g03688 Pseudozyma brasiliensis PSEUBRA_SCAF3g03688 I
RHTO_03422 Rhodosporidium toruloides RHTO_03422 I
RHTO_04199 Rhodosporidium toruloides RHTO_04199 I
RO3G_00948 Rhizopus oryzae RO3G_00948 I
RO3G_06121 Rhizopus oryzae RO3G_06121 I
RO3G_07165 Rhizopus oryzae RO3G_07165 I
RO3G_11614 Rhizopus oryzae RO3G_11614 I
RO3G_15079 Rhizopus oryzae RO3G_15079 I
RSKR_0001102000 Rhabditophanes kr3021 RSKR_0001102000 I
SAKL0B11704g Lachancea kluyveri SAKL0B11704g I
Sakowv30019106m.g Saccoglossus kowalevskii Sakowv30019106m.g I
SBAD_0000850501 Soboliphyme baturini SBAD_0000850501 I
SBOR_8145 Sclerotinia borealis SBOR_8145 I
scaffold2825-EXSNAP2012.1 Pristionchus exspectatus scaffold2825-EXSNAP2012.1 I
scaffold690-EXSNAP2012.12 Pristionchus exspectatus scaffold690-EXSNAP2012.12 I
Scas_Contig649.23 Saccharomyces castellii Scas_Contig649.23 I
SINV23954 Solenopsis invicta SINV23954 I
Sjc_0026780 Schistosoma japonicum Sjc_0026780 I
SLOPH_1335 Spraguea lophii SLOPH_1335 I
SMAR003014 Strigamia maritima SMAR003014 I
SNAPOd2T00012736001 Oikopleura dioica SNAPOd2T00012736001 I
SNOG_07763 Stagonospora nodorum SNOG_07763 I
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I
SPPG_06208 Spizellomyces punctatus SPPG_06208 I
SPU_027774 Strongylocentrotus purpuratus SPU_027774 I
sr10299 Sporisorium reilianum sr10299 I
SS1G_05588 Sclerotinia sclerotiorum SS1G_05588 I
TC004911 Tribolium castaneum TC004911 I
TELCIR_03792 Teladorsagia circumcincta TELCIR_03792 I
TELCIR_12851 Teladorsagia circumcincta TELCIR_12851 I
THOM_1181 Trachipleistophora hominis THOM_1181 I
TMUE_s0092001100 Trichuris muris TMUE_s0092001100 I
TriadG59812 Trichoplax adhaerens TriadG59812 I
TTRE_0000468501 Trichuris trichiura TTRE_0000468501 I
VCUG_02078 Vavraia culicis VCUG_02078 I
VDAG_01770 Verticillium dahliae VDAG_01770 I
WALSEDRAFT_9958 Wallemia sebi WALSEDRAFT_9958 I
ZBAI_03536 Zygosaccharomyces bailii ZBAI_03536 I
ZBAI_08534 Zygosaccharomyces bailii ZBAI_08534 I