Bra025508 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra025508 T031498_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK03576.1
M01119_2.00 		Cannabis sativa
NCACGTGCN
NGCACGTGN		 PBM
Lambert et al.(2019)
pTH10095 		0.861 0.633
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025508.1-P bHLH 436 485

Links

Other bHLH family TFs
Other Brassica rapa TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29739.m003684 Ricinus communis 29739.m003684 I
29790.m000843 Ricinus communis 29790.m000843 I
30138.m003899 Ricinus communis 30138.m003899 I
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I 0.838
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I
BIM2 Arabidopsis thaliana AT1G69010 D
BGIOSGA003819 Oryza indica BGIOSGA003819 N
BGIOSGA003821 Oryza indica BGIOSGA003821 N
BGIOSGA014565 Oryza indica BGIOSGA014565 N
BGIOSGA014566 Oryza indica BGIOSGA014566 N
BGIOSGA014567 Oryza indica BGIOSGA014567 N
BGIOSGA015472 Oryza indica BGIOSGA015472 N
BGIOSGA021743 Oryza indica BGIOSGA021743 I
Bo2g062560 Brassica oleracea Bo2g062560 I
Bo6g108530 Brassica oleracea Bo6g108530 I
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I
Bra004355 Brassica rapa Bra004355 I
Bra038332 Brassica rapa Bra038332 I
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I
BRADI3G54070 Brachypodium distachyon BRADI3G54070 I
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I
Carubv10020679m.g Capsella rubella Carubv10020679m.g I
cassava10497.m1 Manihot esculenta cassava10497.m1 I
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I
Ca_22043 Cicer arietinum Ca_22043 I
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I
Cla022382 Citrullus lanatus Cla022382 I
Cucsa.174600 Cucumis sativus Cucsa.174600 I
Cucsa.328060 Cucumis sativus Cucsa.328060 I
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I
Eucgr.H02385 Eucalyptus grandis Eucgr.H02385 I
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I
F775_10624 Aegilops tauschii F775_10624 N
F775_11347 Aegilops tauschii F775_11347 I
F775_11371 Aegilops tauschii F775_11371 I
F775_14190 Aegilops tauschii F775_14190 I
F775_18830 Aegilops tauschii F775_18830 N
F775_19744 Aegilops tauschii F775_19744 N
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I
GLYMA02G13670 Glycine max GLYMA02G13670 I
GLYMA03G30940 Glycine max GLYMA03G30940 I
GLYMA08G28010 Glycine max GLYMA08G28010 I
GLYMA18G51080 Glycine max GLYMA18G51080 I
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I
GRMZM5G822829 Zea mays GRMZM5G822829 N
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I 0.840
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I
GSMUA_Achr5G20600_001 Musa acuminata GSMUA_Achr5G20600_001 N
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I
LPERR04G17380 Leersia perrieri LPERR04G17380 N
LPERR04G17390 Leersia perrieri LPERR04G17390 N
LPERR04G17400 Leersia perrieri LPERR04G17400 I
LPERR06G05570 Leersia perrieri LPERR06G05570 I
LPERR08G11070 Leersia perrieri LPERR08G11070 N
Lus10004630.g Linum usitatissimum Lus10004630.g I
Lus10011578.g Linum usitatissimum Lus10011578.g I
Lus10019247.g Linum usitatissimum Lus10019247.g I
Lus10026684.g Linum usitatissimum Lus10026684.g I
Lus10028175.g Linum usitatissimum Lus10028175.g I
Lus10034358.g Linum usitatissimum Lus10034358.g I
MDP0000261293 Malus domestica MDP0000261293 I
mgf011829m Mimulus guttatus mgf011829m I
mgf013208m Mimulus guttatus mgf013208m I
MLOC_38470 Hordeum vulgare MLOC_38470 N
MLOC_64735 Hordeum vulgare MLOC_64735 I
MTR_5g048350 Medicago truncatula MTR_5g048350 I
MTR_7g017320 Medicago truncatula MTR_7g017320 I
OB01G30110 Oryza brachyantha OB01G30110 N
OB04G28350 Oryza brachyantha OB04G28350 N
OB04G28380 Oryza brachyantha OB04G28380 N
OB04G28390 Oryza brachyantha OB04G28390 N
OBART01G20350 Oryza barthii OBART01G20350 N
OBART04G21320 Oryza barthii OBART04G21320 N
OBART04G21370 Oryza barthii OBART04G21370 N
OBART06G06000 Oryza barthii OBART06G06000 I
OGLUM01G23970 Oryza glumaepatula OGLUM01G23970 N
OGLUM04G21260 Oryza glumaepatula OGLUM04G21260 N
OGLUM04G21350 Oryza glumaepatula OGLUM04G21350 N
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I
OLONG_009946 Oryza longistaminata OLONG_009946 N
OLONG_013313 Oryza longistaminata OLONG_013313 I
OLONG_016958 Oryza longistaminata OLONG_016958 N
OLONG_016960 Oryza longistaminata OLONG_016960 N
OMERI01G18770 Oryza meridionalis OMERI01G18770 N
OMERI01G18860 Oryza meridionalis OMERI01G18860 N
OMERI04G17790 Oryza meridionalis OMERI04G17790 N
OMERI04G17820 Oryza meridionalis OMERI04G17820 N
OMERI06G07190 Oryza meridionalis OMERI06G07190 I
ONIVA01G22920 Oryza nivara ONIVA01G22920 N
ONIVA01G22980 Oryza nivara ONIVA01G22980 N
ONIVA04G19650 Oryza nivara ONIVA04G19650 N
ONIVA04G19860 Oryza nivara ONIVA04G19860 N
ONIVA06G06960 Oryza nivara ONIVA06G06960 I
OPUNC04G19030 Oryza punctata OPUNC04G19030 N
OPUNC04G19040 Oryza punctata OPUNC04G19040 N
OPUNC06G05770 Oryza punctata OPUNC06G05770 I
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I
ORGLA04G0183800 Oryza glaberrima ORGLA04G0183800 N
ORGLA04G0183900 Oryza glaberrima ORGLA04G0183900 N
ORGLA11G0077500 Oryza glaberrima ORGLA11G0077500 N
ORUFI01G23050 Oryza rufipogon ORUFI01G23050 N
ORUFI04G22890 Oryza rufipogon ORUFI04G22890 N
ORUFI04G22910 Oryza rufipogon ORUFI04G22910 N
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I
ORUFI11G09150 Oryza rufipogon ORUFI11G09150 N
OS04G0557200 Oryza sativa OS04G0557200 N
OS04G0557800 Oryza sativa OS04G0557800 N
OS06G0193400 Oryza sativa OS06G0193400 I
Pavir.Cb00833 Panicum virgatum Pavir.Cb00833 N
Pavir.Gb01093 Panicum virgatum Pavir.Gb01093 N
Pavir.J34298 Panicum virgatum Pavir.J34298 N
PDK_20s1464821g001 Phoenix dactylifera PDK_20s1464821g001 I
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I
PGSC0003DMG402030621 Solanum tuberosum PGSC0003DMG402030621 I
PK00238.1 Cannabis sativa PK00238.1 I
PK01364.1 Cannabis sativa PK01364.1 I
PK08539.1 Cannabis sativa PK08539.1 I
Pm002304 Prunus mume Pm002304 I
Pm027004 Prunus mume Pm027004 I
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I
POPTR_0014s06190 Populus trichocarpa POPTR_0014s06190 I
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I
PRUPE_ppa017709mg Prunus persica PRUPE_ppa017709mg I
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I
SapurV1A.0248s0190 Salix purpurea SapurV1A.0248s0190 I
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I
Sb06g016380 Sorghum bicolor Sb06g016380 N 0.851
Sb06g025020 Sorghum bicolor Sb06g025020 N
Sb06g025040 Sorghum bicolor Sb06g025040 I
Sb06g025060 Sorghum bicolor Sb06g025060 I
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I
Si000845m.g Setaria italica Si000845m.g I
Si012401m.g Setaria italica Si012401m.g I
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I
TCM_004959 Theobroma cacao TCM_004959 I
TCM_011433 Theobroma cacao TCM_011433 I
TCM_019015 Theobroma cacao TCM_019015 I
TCM_037455 Theobroma cacao TCM_037455 I
TCM_037645 Theobroma cacao TCM_037645 I
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I
Traes_2AL_4F71A8FB4 Triticum aestivum Traes_2AL_4F71A8FB4 N
Traes_2DL_099D4CA9B Triticum aestivum Traes_2DL_099D4CA9B N
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I
Traes_6BL_AEB13ECDE Triticum aestivum Traes_6BL_AEB13ECDE I
TRIUR3_18279 Triticum urartu TRIUR3_18279 N
TRIUR3_26157 Triticum urartu TRIUR3_26157 N
TRIUR3_26880 Triticum urartu TRIUR3_26880 I
TRIUR3_35186 Triticum urartu TRIUR3_35186 N
BIM2 Vitis vinifera VIT_01s0010g00540 I
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I
BIM3 Vitis vinifera VIT_14s0083g00930 I