USF1 (Bos taurus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSBTAG00000017873 T033097_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000023760 bHLH 200 255

Links

Other bHLH family TFs
Other Bos taurus TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013544 Aedes aegypti AAEL013544 I
AATE009348 Anopheles atroparvus AATE009348 I
ACEP27848 Atta cephalotes ACEP27848 I
ACOM026725 Anopheles coluzzii ACOM026725 I
ACUA004708 Anopheles culicifacies ACUA004708 I
ACYPI004750 Acyrthosiphon pisum ACYPI004750 I
ADAC007677 Anopheles darlingi ADAC007677 I
AFAF007233 Anopheles farauti AFAF007233 I
AFUN008770 Anopheles funestus AFUN008770 I
AGAP009899 Anopheles gambiae AGAP009899 I
AMAM001551 Anopheles maculatus AMAM001551 I
AMEC014989 Anopheles melas AMEC014989 I
AMEM009101 Anopheles merus AMEM009101 I
AMIN006836 Anopheles minimus AMIN006836 I
ANCCAN_10701 Ancylostoma caninum ANCCAN_10701 I
ASIS008116 Anopheles sinensis ASIS008116 I
ASU_11043 Ascaris suum ASU_11043 I
Bm9026 Brugia malayi Bm9026 I
BXY_0483000 Bursaphelenchus xylophilus BXY_0483000 I
CGOC_0000202301 Cylicostephanus goldi CGOC_0000202301 I
CLEC001135 Cimex lectularius CLEC001135 I
EEL_0000130601 Elaeophora elaphi EEL_0000130601 I
klu Drosophila melanogaster FBgn0013469 D
GF23812 Drosophila ananassae FBgn0100806 I
GH16578 Drosophila grimshawi FBgn0124049 I
GI13870 Drosophila mojavensis FBgn0136624 I
GL15747 Drosophila persimilis FBgn0153351 I
GM24789 Drosophila sechellia FBgn0179651 I
GD12837 Drosophila simulans FBgn0184562 I
GJ11729 Drosophila virilis FBgn0198983 I
GK18880 Drosophila willistoni FBgn0220878 I
GE20250 Drosophila yakuba FBgn0237569 I
GA23784 Drosophila pseudoobscura FBgn0245183 I
GB42180 Apis mellifera GB42180 I
GPLIN_001505900 Globodera pallida GPLIN_001505900 I
HCOI02146900 Haemonchus contortus HCOI02146900 I
HHAL008432-PA Halyomorpha halys HHAL008432-PA I
ISCW010362 Ixodes scapularis ISCW010362 I
L596_g19227 Steinernema carpocapsae L596_g19227 I
L798_04121 Zootermopsis nevadensis L798_04121 I
L892_g30369 Steinernema scapterisci L892_g30369 I
L898_g5287 Steinernema monticolum L898_g5287 I
LCUP004097 Lucilia cuprina LCUP004097 I
LDEC006538 Leptinotarsa decemlineata LDEC006538 I
LOAG_17546 Loa loa LOAG_17546 I
MDOA010298 Musca domestica MDOA010298 I
MhA1_Contig1668.frz3.gene4 Meloidogyne hapla MhA1_Contig1668.frz3.gene4 I
MhA1_Contig3096.frz3.gene1 Meloidogyne hapla MhA1_Contig3096.frz3.gene1 I
nAv.1.0.1.g02699 Acanthocheilonema viteae nAv.1.0.1.g02699 I
nDi.2.2.2.g07689 Dirofilaria immitis nDi.2.2.2.g07689 I
nLs.2.1.2.g02913 Litomosoides sigmodontis nLs.2.1.2.g02913 I
NV17203 Nasonia vitripennis NV17203 I
PHUM540640 Pediculus humanus PHUM540640 I
PPA26808 Pristionchus pacificus PPA26808 I
PPAI001591 Phlebotomus papatasi PPAI001591 I
PTRK_0000952000 Parastrongyloides trichosuri PTRK_0000952000 I
PTRK_0001586500 Parastrongyloides trichosuri PTRK_0001586500 I
RPRC001140 Rhodnius prolixus RPRC001140 I
scaffold108-EXSNAP2012.21 Pristionchus exspectatus scaffold108-EXSNAP2012.21 I
SINV25082 Solenopsis invicta SINV25082 I
SMAR002322 Strigamia maritima SMAR002322 I
SPAL_0000289400 Strongyloides papillosus SPAL_0000289400 I
SVE_1611300 Strongyloides venezuelensis SVE_1611300 I
TC002783 Tribolium castaneum TC002783 I
WBGene00248644 Onchocerca volvulus WBGene00248644 I
YQE_09824 Dendroctonus ponderosae YQE_09824 I