GPLIN_001505900 (Globodera pallida)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 GPLIN_001505900 T153619_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
klu
M03680_2.00 		Drosophila melanogaster
HCCRCCCACGCAH
DTGCGTGGGYGGD		 SELEX
Nitta et al.(2015)
klu_1 		0.764 0.761
klu
M03681_2.00 		Drosophila melanogaster
YMCGCCCMCGCAH
DTGCGKGGGCGKR		 SELEX
Nitta et al.(2015)
klu_2 		0.764 0.761
klu
M06114_2.00 		Drosophila melanogaster
MCACCCMCRCA
TGYGKGGGTGK		 B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469 		0.764 0.761
klu
M06115_2.00 		Drosophila melanogaster
NNNNMCACCCMCRCN
NGYGKGGGTGKNNNN		 B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469 		0.764 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_001505900 C2H2 ZF 468 491
GPLIN_001505900 C2H2 ZF 506 528
GPLIN_001505900 C2H2 ZF 534 556
GPLIN_001505900 C2H2 ZF 562 584

Links

Other C2H2 ZF family TFs
Other Globodera pallida TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PPA26808 Pristionchus pacificus PPA26808 I 0.800
scaffold108-EXSNAP2012.21 Pristionchus exspectatus scaffold108-EXSNAP2012.21 I 0.800
ANCCAN_10701 Ancylostoma caninum ANCCAN_10701 I 0.797
CGOC_0000202301 Cylicostephanus goldi CGOC_0000202301 I 0.797
HCOI02146900 Haemonchus contortus HCOI02146900 I 0.797
LOAG_17546 Loa loa LOAG_17546 I 0.796
Bm9026 Brugia malayi Bm9026 I 0.794
WBGene00248644 Onchocerca volvulus WBGene00248644 I 0.794
EEL_0000130601 Elaeophora elaphi EEL_0000130601 I 0.794
L596_g19227 Steinernema carpocapsae L596_g19227 I 0.794
L892_g30369 Steinernema scapterisci L892_g30369 I 0.794
L898_g5287 Steinernema monticolum L898_g5287 I 0.794
nAv.1.0.1.g02699 Acanthocheilonema viteae nAv.1.0.1.g02699 I 0.794
nDi.2.2.2.g07689 Dirofilaria immitis nDi.2.2.2.g07689 I 0.794
nLs.2.1.2.g02913 Litomosoides sigmodontis nLs.2.1.2.g02913 I 0.794
ASU_11043 Ascaris suum ASU_11043 I 0.791
MhA1_Contig1668.frz3.gene4 Meloidogyne hapla MhA1_Contig1668.frz3.gene4 I 0.788
MhA1_Contig3096.frz3.gene1 Meloidogyne hapla MhA1_Contig3096.frz3.gene1 I 0.788
BXY_0483000 Bursaphelenchus xylophilus BXY_0483000 I 0.773
PTRK_0000952000 Parastrongyloides trichosuri PTRK_0000952000 I 0.768
PTRK_0001586500 Parastrongyloides trichosuri PTRK_0001586500 I 0.768
SPAL_0000289400 Strongyloides papillosus SPAL_0000289400 I 0.768
SVE_1611300 Strongyloides venezuelensis SVE_1611300 I 0.768
ISCW010362 Ixodes scapularis ISCW010362 I 0.767
L798_04121 Zootermopsis nevadensis L798_04121 I 0.767
ACYPI004750 Acyrthosiphon pisum ACYPI004750 I 0.764
klu Drosophila melanogaster FBgn0013469 D 0.764
GF23812 Drosophila ananassae FBgn0100806 I 0.764
GG13951 Drosophila erecta FBgn0106213 I 0.764
GH16578 Drosophila grimshawi FBgn0124049 I 0.764
GI13870 Drosophila mojavensis FBgn0136624 I 0.764
GL15747 Drosophila persimilis FBgn0153351 I 0.764
GM24789 Drosophila sechellia FBgn0179651 I 0.764
GD12837 Drosophila simulans FBgn0184562 I 0.764
GJ11729 Drosophila virilis FBgn0198983 I 0.764
GK18880 Drosophila willistoni FBgn0220878 I 0.764
GE20250 Drosophila yakuba FBgn0237569 I 0.764
GA23784 Drosophila pseudoobscura FBgn0245183 I 0.764
GB42180 Apis mellifera GB42180 I 0.764
PHUM540640 Pediculus humanus PHUM540640 I 0.764
RPRC001140 Rhodnius prolixus RPRC001140 I 0.764
SMAR002322 Strigamia maritima SMAR002322 I 0.764
TC002783 Tribolium castaneum TC002783 I 0.764
YQE_09824 Dendroctonus ponderosae YQE_09824 I 0.764
CLEC001135 Cimex lectularius CLEC001135 I 0.764
HHAL008432-PA Halyomorpha halys HHAL008432-PA I 0.764
LCUP004097 Lucilia cuprina LCUP004097 I 0.764
LDEC006538 Leptinotarsa decemlineata LDEC006538 I 0.764
MDOA010298 Musca domestica MDOA010298 I 0.764
PPAI001591 Phlebotomus papatasi PPAI001591 I 0.764
ACEP27848 Atta cephalotes ACEP27848 I 0.759
NV17203 Nasonia vitripennis NV17203 I 0.759
SINV25082 Solenopsis invicta SINV25082 I 0.759
CBN12312 Caenorhabditis brenneri CBN12312 I 0.757
CBN30915 Caenorhabditis brenneri CBN30915 I 0.757
CJA16091 Caenorhabditis japonica CJA16091 I 0.757
CRE13956 Caenorhabditis remanei CRE13956 I 0.757