nLs.2.1.2.g02913 (Litomosoides sigmodontis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nLs.2.1.2.g02913 T155327_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
klu
M03680_2.00 		Drosophila melanogaster
HCCRCCCACGCAH
DTGCGTGGGYGGD		 SELEX
Nitta et al.(2015)
klu_1 		0.777 0.804
klu
M03681_2.00 		Drosophila melanogaster
YMCGCCCMCGCAH
DTGCGKGGGCGKR		 SELEX
Nitta et al.(2015)
klu_2 		0.777 0.804
klu
M06114_2.00 		Drosophila melanogaster
MCACCCMCRCA
TGYGKGGGTGK		 B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469 		0.777 0.804
klu
M06115_2.00 		Drosophila melanogaster
NNNNMCACCCMCRCN
NGYGKGGGTGKNNNN		 B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469 		0.777 0.804
klu-1
M00637_2.00 		Caenorhabditis elegans
CDCCCMCV
BGKGGGHG		 PBM
Narasimhan et al.(2015)
pTH9355 		0.761 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t02913-RA C2H2 ZF 534 557
nLs.2.1.2.t02913-RA C2H2 ZF 574 596
nLs.2.1.2.t02913-RA C2H2 ZF 602 624
nLs.2.1.2.t02913-RA C2H2 ZF 630 652

Links

Other C2H2 ZF family TFs
Other Litomosoides sigmodontis TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bm9026 Brugia malayi Bm9026 I 0.822
LOAG_17546 Loa loa LOAG_17546 I 0.822
WBGene00248644 Onchocerca volvulus WBGene00248644 I 0.822
EEL_0000130601 Elaeophora elaphi EEL_0000130601 I 0.822
nAv.1.0.1.g02699 Acanthocheilonema viteae nAv.1.0.1.g02699 I 0.822
ASU_11043 Ascaris suum ASU_11043 I 0.819
L596_g19227 Steinernema carpocapsae L596_g19227 I 0.819
L892_g30369 Steinernema scapterisci L892_g30369 I 0.819
L898_g5287 Steinernema monticolum L898_g5287 I 0.819
nDi.2.2.2.g07689 Dirofilaria immitis nDi.2.2.2.g07689 I 0.819
MhA1_Contig1668.frz3.gene4 Meloidogyne hapla MhA1_Contig1668.frz3.gene4 I 0.803
MhA1_Contig3096.frz3.gene1 Meloidogyne hapla MhA1_Contig3096.frz3.gene1 I 0.803
ANCCAN_10701 Ancylostoma caninum ANCCAN_10701 I 0.798
CGOC_0000202301 Cylicostephanus goldi CGOC_0000202301 I 0.798
HCOI02146900 Haemonchus contortus HCOI02146900 I 0.798
GPLIN_001505900 Globodera pallida GPLIN_001505900 I 0.794
PPA26808 Pristionchus pacificus PPA26808 I 0.787
scaffold108-EXSNAP2012.21 Pristionchus exspectatus scaffold108-EXSNAP2012.21 I 0.787
PTRK_0000952000 Parastrongyloides trichosuri PTRK_0000952000 I 0.782
PTRK_0001586500 Parastrongyloides trichosuri PTRK_0001586500 I 0.782
SPAL_0000289400 Strongyloides papillosus SPAL_0000289400 I 0.782
SVE_1611300 Strongyloides venezuelensis SVE_1611300 I 0.782
L798_04121 Zootermopsis nevadensis L798_04121 I 0.780
ACYPI004750 Acyrthosiphon pisum ACYPI004750 I 0.777
klu Drosophila melanogaster FBgn0013469 D 0.777
GF23812 Drosophila ananassae FBgn0100806 I 0.777
GG13951 Drosophila erecta FBgn0106213 I 0.777
GH16578 Drosophila grimshawi FBgn0124049 I 0.777
GI13870 Drosophila mojavensis FBgn0136624 I 0.777
GL15747 Drosophila persimilis FBgn0153351 I 0.777
GM24789 Drosophila sechellia FBgn0179651 I 0.777
GD12837 Drosophila simulans FBgn0184562 I 0.777
GJ11729 Drosophila virilis FBgn0198983 I 0.777
GK18880 Drosophila willistoni FBgn0220878 I 0.777
GE20250 Drosophila yakuba FBgn0237569 I 0.777
GA23784 Drosophila pseudoobscura FBgn0245183 I 0.777
GB42180 Apis mellifera GB42180 I 0.777
PHUM540640 Pediculus humanus PHUM540640 I 0.777
RPRC001140 Rhodnius prolixus RPRC001140 I 0.777
SMAR002322 Strigamia maritima SMAR002322 I 0.777
TC002783 Tribolium castaneum TC002783 I 0.777
YQE_09824 Dendroctonus ponderosae YQE_09824 I 0.777
CLEC001135 Cimex lectularius CLEC001135 I 0.777
HHAL008432-PA Halyomorpha halys HHAL008432-PA I 0.777
LCUP004097 Lucilia cuprina LCUP004097 I 0.777
LDEC006538 Leptinotarsa decemlineata LDEC006538 I 0.777
MDOA010298 Musca domestica MDOA010298 I 0.777
PPAI001591 Phlebotomus papatasi PPAI001591 I 0.777
BXY_0483000 Bursaphelenchus xylophilus BXY_0483000 I 0.776
ISCW010362 Ixodes scapularis ISCW010362 I 0.773
ACEP27848 Atta cephalotes ACEP27848 I 0.772
SINV25082 Solenopsis invicta SINV25082 I 0.772
NV17203 Nasonia vitripennis NV17203 I 0.769
CBG19812 Caenorhabditis briggsae CBG19812 I 0.761
CBN12312 Caenorhabditis brenneri CBN12312 I 0.761
CBN30915 Caenorhabditis brenneri CBN30915 I 0.761
CJA16091 Caenorhabditis japonica CJA16091 I 0.761
CRE13956 Caenorhabditis remanei CRE13956 I 0.761
klu-1 Caenorhabditis elegans WBGene00013970 D 0.761