PGSC0003DMG400001594 (Solanum tuberosum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 PGSC0003DMG400001594 T043404_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18401.1
M01126_2.00 		Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN		 PBM
Lambert et al.(2019)
pTH11272 		0.873 0.804
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400004038 bHLH 57 107
PGSC0003DMT400004039 bHLH 58 108

Links

Other bHLH family TFs
Other Solanum tuberosum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29711.m000322 Ricinus communis 29711.m000322 I 0.873
29830.m001386 Ricinus communis 29830.m001386 I 0.876
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.876
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.888
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.864
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.873
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.873
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.885
Cla001685 Citrullus lanatus Cla001685 I 0.852
Cla014511 Citrullus lanatus Cla014511 I 0.873
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.873
Cucsa.169240 Cucumis sativus Cucsa.169240 I 0.852
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.864
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.885
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.873
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.841
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I 0.864
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.849
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.838
GLYMA07G26910 Glycine max GLYMA07G26910 I 0.863
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.876
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.855
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.851
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.873
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.876
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.876
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.876
MDP0000275844 Malus domestica MDP0000275844 I 0.876
mgf017107m Mimulus guttatus mgf017107m I 0.903
MTR_4g075480 Medicago truncatula MTR_4g075480 I 0.864
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.864
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.885
OS02G0433600 Oryza sativa OS02G0433600 I 0.864
PK18401.1 Cannabis sativa PK18401.1 D 0.873
Pm021043 Prunus mume Pm021043 I 0.876
Pm026758 Prunus mume Pm026758 I 0.873
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.873
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I 0.841
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I 0.861
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.876
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.873
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.861
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.872
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.914
TCM_000204 Theobroma cacao TCM_000204 I 0.876
TCM_006692 Theobroma cacao TCM_006692 I 0.873
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.876
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.873