POPTR_0004s17540 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0004s17540 T043797_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18401.1
M01126_2.00 		Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN		 PBM
Lambert et al.(2019)
pTH11272 		0.914 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s17540.1 bHLH 42 92
POPTR_0004s17540.2 bHLH 42 92
POPTR_0004s17540.3 bHLH 42 92
POPTR_0004s17540.4 bHLH 42 92
POPTR_0004s17540.5 bHLH 42 92

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.914
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.914
Cla014511 Citrullus lanatus Cla014511 I 0.914
Pm026758 Prunus mume Pm026758 I 0.914
29711.m000322 Ricinus communis 29711.m000322 I 0.914
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.914
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.914
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.914
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.914
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.914
PK18401.1 Cannabis sativa PK18401.1 D 0.914
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.911
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.911
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.911
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.911
TCM_000204 Theobroma cacao TCM_000204 I 0.911
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.911
Pm021043 Prunus mume Pm021043 I 0.911
29830.m001386 Ricinus communis 29830.m001386 I 0.911
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.911
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.911
MDP0000275844 Malus domestica MDP0000275844 I 0.911
TCM_006692 Theobroma cacao TCM_006692 I 0.903
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.903
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.903
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.903
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.902
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.900
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.898
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.898
OS02G0433600 Oryza sativa OS02G0433600 I 0.898
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.890
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.890
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.890
Cucsa.169240 Cucumis sativus Cucsa.169240 I 0.887
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.886
mgf017107m Mimulus guttatus mgf017107m I 0.885
GLYMA07G26910 Glycine max GLYMA07G26910 I 0.882
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I 0.879
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.879
MTR_4g075480 Medicago truncatula MTR_4g075480 I 0.876
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I 0.876
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.876
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I 0.876
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.876
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I 0.873
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.873
GRMZM2G114444 Zea mays GRMZM2G114444 I 0.863
LPERR02G12290 Leersia perrieri LPERR02G12290 I 0.863
OB0197G10010 Oryza brachyantha OB0197G10010 I 0.863
Sb03g028030 Sorghum bicolor Sb03g028030 I 0.863
Si017804m.g Setaria italica Si017804m.g I 0.863
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I 0.863
Cla001685 Citrullus lanatus Cla001685 I 0.860
evm.TU.supercontig_17.155 Carica papaya evm.TU.supercontig_17.155 I 0.854
BHLH121 Arabidopsis thaliana AT3G19860 I 0.844
Bo1g112310 Brassica oleracea Bo1g112310 I 0.844
Bra038236 Brassica rapa Bra038236 I 0.844
bHLH121 Arabidopsis lyrata fgenesh2_kg.3__2204__AT3G19860.1 I 0.844
Bostr.19424s0675 Boechera stricta Bostr.19424s0675 I 0.844
Cagra.0316s0082 Capsella grandiflora Cagra.0316s0082 I 0.844
Thhalv10021271m.g Eutrema salsugineum Thhalv10021271m.g I 0.844
Thhalv10023630m.g Eutrema salsugineum Thhalv10023630m.g I 0.844
BRADI3G11520 Brachypodium distachyon BRADI3G11520 I 0.839
Pavir.Ab01730 Panicum virgatum Pavir.Ab01730 I 0.839