AMTR_s00041p00193340 (Amborella trichopoda)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AMTR_s00041p00193340 T030504_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18401.1
M01126_2.00 		Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN		 PBM
Lambert et al.(2019)
pTH11272 		0.911 0.882
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN13431 bHLH 47 97

Links

Other bHLH family TFs
Other Amborella trichopoda TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.914
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.914
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.914
TCM_000204 Theobroma cacao TCM_000204 I 0.914
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.914
Pm021043 Prunus mume Pm021043 I 0.914
29830.m001386 Ricinus communis 29830.m001386 I 0.914
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.914
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.914
MDP0000275844 Malus domestica MDP0000275844 I 0.914
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.911
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.911
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.911
Cla014511 Citrullus lanatus Cla014511 I 0.911
Pm026758 Prunus mume Pm026758 I 0.911
29711.m000322 Ricinus communis 29711.m000322 I 0.911
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.911
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.911
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.911
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.911
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.911
PK18401.1 Cannabis sativa PK18401.1 D 0.911
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.903
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.902
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.902
OS02G0433600 Oryza sativa OS02G0433600 I 0.902
TCM_006692 Theobroma cacao TCM_006692 I 0.900
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.900
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.900
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.900
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.898
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.893
Cucsa.169240 Cucumis sativus Cucsa.169240 I 0.890
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.889
mgf017107m Mimulus guttatus mgf017107m I 0.888
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.887
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.887
MTR_4g075480 Medicago truncatula MTR_4g075480 I 0.879
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I 0.879
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.879
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I 0.879
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.879
GLYMA07G26910 Glycine max GLYMA07G26910 I 0.878
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I 0.876
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I 0.876
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.876
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.876
GRMZM2G114444 Zea mays GRMZM2G114444 I 0.866
LPERR02G12290 Leersia perrieri LPERR02G12290 I 0.866
OB0197G10010 Oryza brachyantha OB0197G10010 I 0.866
Sb03g028030 Sorghum bicolor Sb03g028030 I 0.866
Si017804m.g Setaria italica Si017804m.g I 0.866
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I 0.866
Cla001685 Citrullus lanatus Cla001685 I 0.864
evm.TU.supercontig_17.155 Carica papaya evm.TU.supercontig_17.155 I 0.851
BRADI3G11520 Brachypodium distachyon BRADI3G11520 I 0.842
Pavir.Ab01730 Panicum virgatum Pavir.Ab01730 I 0.842
BHLH121 Arabidopsis thaliana AT3G19860 I 0.840
Bo1g112310 Brassica oleracea Bo1g112310 I 0.840
Bra038236 Brassica rapa Bra038236 I 0.840
bHLH121 Arabidopsis lyrata fgenesh2_kg.3__2204__AT3G19860.1 I 0.840
Bostr.19424s0675 Boechera stricta Bostr.19424s0675 I 0.840
Cagra.0316s0082 Capsella grandiflora Cagra.0316s0082 I 0.840
Thhalv10021271m.g Eutrema salsugineum Thhalv10021271m.g I 0.840
Thhalv10023630m.g Eutrema salsugineum Thhalv10023630m.g I 0.840