Carubv10006994m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10006994m.g T049355_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006994m bHLH 192 232

Links

Other bHLH family TFs
Other Capsella rubella TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27733.m000033 Ricinus communis 27733.m000033 N 0.857
29842.m003704 Ricinus communis 29842.m003704 N 0.858
30170.m014085 Ricinus communis 30170.m014085 N 0.882
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.893
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.882
Aquca_028_00271 Aquilegia coerulea Aquca_028_00271 N 0.858
BHLH110 Arabidopsis thaliana AT1G27660 N 0.882
BHLH123 Arabidopsis thaliana AT3G20640 N 0.857
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.893
BHLH103 Arabidopsis thaliana AT4G21340 N 0.903
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.858
BGIOSGA017200 Oryza indica BGIOSGA017200 N 0.858
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.858
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.858
Bo01052s010 Brassica oleracea Bo01052s010 N 0.857
Bo1g024090 Brassica oleracea Bo1g024090 N 0.879
Bo3g076150 Brassica oleracea Bo3g076150 N 0.857
Bo9g076250 Brassica oleracea Bo9g076250 N 0.881
Bostr.10689s0083 Boechera stricta Bostr.10689s0083 N 0.903
Bostr.19424s0583 Boechera stricta Bostr.19424s0583 N 0.857
Bostr.26675s0184 Boechera stricta Bostr.26675s0184 N 0.860
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.893
Bra001798 Brassica rapa Bra001798 N 0.857
Bra013520 Brassica rapa Bra013520 N 0.903
Bra029562 Brassica rapa Bra029562 N 0.881
Bra035761 Brassica rapa Bra035761 N 0.844
Cagra.0316s0001 Capsella grandiflora Cagra.0316s0001 N 0.857
Cagra.1062s0002 Capsella grandiflora Cagra.1062s0002 N 0.914
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.893
Carubv10003683m.g Capsella rubella Carubv10003683m.g N 0.893
Carubv10013632m.g Capsella rubella Carubv10013632m.g N 0.857
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.858
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.858
cassava28105.m1 Manihot esculenta cassava28105.m1 N 0.857
cassava36956.valid.m1 Manihot esculenta cassava36956.valid.m1 N 0.857
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.882
Ca_00214 Cicer arietinum Ca_00214 N 0.858
Ca_04928 Cicer arietinum Ca_04928 N 0.882
Ca_06936 Cicer arietinum Ca_06936 N 0.857
Ca_19891 Cicer arietinum Ca_19891 N 0.857
chr5.CM0200.1030.nc Lotus japonicus chr5.CM0200.1030.nc N 0.861
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N 0.882
Ciclev10008228m.g Citrus clementina Ciclev10008228m.g N 0.857
Ciclev10015039m.g Citrus clementina Ciclev10015039m.g N 0.858
Cla003883 Citrullus lanatus Cla003883 N 0.857
Cla021101 Citrullus lanatus Cla021101 N 0.882
Cucsa.059580 Cucumis sativus Cucsa.059580 N 0.857
Cucsa.125970 Cucumis sativus Cucsa.125970 N 0.854
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.882
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.882
Eucgr.D00881 Eucalyptus grandis Eucgr.D00881 N 0.881
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.858
Eucgr.F03384 Eucalyptus grandis Eucgr.F03384 N 0.857
evm.TU.supercontig_12.1 Carica papaya evm.TU.supercontig_12.1 N 0.857
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.858
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.882
F775_12027 Aegilops tauschii F775_12027 N 0.858
F775_20405 Aegilops tauschii F775_20405 N 0.858
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.882
gene03259-v1.0-hybrid Fragaria vesca gene03259-v1.0-hybrid N 0.857
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.882
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.858
GLYMA06G40760 Glycine max GLYMA06G40760 N 0.857
GLYMA12G17630 Glycine max GLYMA12G17630 N 0.857
GLYMA12G34490 Glycine max GLYMA12G34490 N 0.857
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.858
GLYMA13G36010 Glycine max GLYMA13G36010 N 0.857
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.858
GLYMA16G24661 Glycine max GLYMA16G24661 N 0.845
Gorai.002G079200 Gossypium raimondii Gorai.002G079200 N 0.857
Gorai.006G085000 Gossypium raimondii Gorai.006G085000 N 0.858
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.858
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.882
Gorai.009G429100 Gossypium raimondii Gorai.009G429100 N 0.857
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.858
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.858
GRMZM2G004732 Zea mays GRMZM2G004732 N 0.858
GRMZM2G155217 Zea mays GRMZM2G155217 N 0.858
GRMZM2G313058 Zea mays GRMZM2G313058 N 0.858
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.858
GSMUA_Achr10G04860_001 Musa acuminata GSMUA_Achr10G04860_001 N 0.858
GSMUA_Achr11G18680_001 Musa acuminata GSMUA_Achr11G18680_001 N 0.858
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.858
GSMUA_Achr5G26430_001 Musa acuminata GSMUA_Achr5G26430_001 N 0.858
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.882
GSMUA_Achr9G12100_001 Musa acuminata GSMUA_Achr9G12100_001 N 0.858
GSMUA_Achr9G24670_001 Musa acuminata GSMUA_Achr9G24670_001 N 0.858
LjSGA_014369.1 Lotus japonicus LjSGA_014369.1 N 0.858
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.879
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.858
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.858
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.858
Lus10025987.g Linum usitatissimum Lus10025987.g N 0.858
Lus10038550.g Linum usitatissimum Lus10038550.g N 0.857
MDP0000168695 Malus domestica MDP0000168695 N 0.882
MDP0000262020 Malus domestica MDP0000262020 N 0.882
MDP0000295440 Malus domestica MDP0000295440 N 0.857
MDP0000296508 Malus domestica MDP0000296508 N 0.857
MDP0000301999 Malus domestica MDP0000301999 N 0.858
MDP0000687814 Malus domestica MDP0000687814 N 0.882
mgf001258m Mimulus guttatus mgf001258m N 0.857
mgf008488m Mimulus guttatus mgf008488m N 0.858
mgf013138m Mimulus guttatus mgf013138m N 0.882
mgf016565m Mimulus guttatus mgf016565m N 0.858
MLOC_37666 Hordeum vulgare MLOC_37666 N 0.858
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.882
MLOC_72940 Hordeum vulgare MLOC_72940 N 0.858
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.858
MTR_2g081820 Medicago truncatula MTR_2g081820 N 0.857
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.882
MTR_8g466800 Medicago truncatula MTR_8g466800 N 0.857
OB04G33270 Oryza brachyantha OB04G33270 N 0.858
OB05G29420 Oryza brachyantha OB05G29420 N 0.858
OB08G14900 Oryza brachyantha OB08G14900 N 0.858
OBART01G33360 Oryza barthii OBART01G33360 N 0.858
OBART04G24870 Oryza barthii OBART04G24870 N 0.858
OBART05G21860 Oryza barthii OBART05G21860 N 0.858
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.858
OGLUM04G26290 Oryza glumaepatula OGLUM04G26290 N 0.858
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.858
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.858
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.882
OLONG_026655 Oryza longistaminata OLONG_026655 N 0.858
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.858
OMERI04G21930 Oryza meridionalis OMERI04G21930 N 0.858
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.858
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.858
ONIVA03G13290 Oryza nivara ONIVA03G13290 N 0.858
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.858
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.882
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.858
OPUNC04G23980 Oryza punctata OPUNC04G23980 N 0.858
orange1.1g011373m.g Citrus sinensis orange1.1g011373m.g N 0.858
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.882
ORGLA04G0213700 Oryza glaberrima ORGLA04G0213700 N 0.858
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.858
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.858
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.858
ORUFI06G19010 Oryza rufipogon ORUFI06G19010 N 0.858
OS04G0631600 Oryza sativa OS04G0631600 N 0.858
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.858
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.858
Pavir.Ga00384 Panicum virgatum Pavir.Ga00384 N 0.858
Pavir.J10443 Panicum virgatum Pavir.J10443 N 0.858
Pavir.J13928 Panicum virgatum Pavir.J13928 N 0.858
Pavir.J25904 Panicum virgatum Pavir.J25904 N 0.858
PDK_20s1457351g001 Phoenix dactylifera PDK_20s1457351g001 N 0.858
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.882
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.882
PGSC0003DMG400005064 Solanum tuberosum PGSC0003DMG400005064 N 0.857
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.858
PGSC0003DMG400019236 Solanum tuberosum PGSC0003DMG400019236 N 0.857
PGSC0003DMG400025020 Solanum tuberosum PGSC0003DMG400025020 N 0.857
PK14284.1 Cannabis sativa PK14284.1 N 0.858
PK22680.1 Cannabis sativa PK22680.1 N 0.857
Pm005865 Prunus mume Pm005865 N 0.882
Pm009855 Prunus mume Pm009855 N 0.858
Pm011692 Prunus mume Pm011692 N 0.857
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.882
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.858
POPTR_0005s12150 Populus trichocarpa POPTR_0005s12150 N 0.858
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.882
POPTR_0007s13360 Populus trichocarpa POPTR_0007s13360 N 0.858
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.858
POPTR_0011s13320 Populus trichocarpa POPTR_0011s13320 N 0.857
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.882
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.858
PRUPE_ppa023041mg Prunus persica PRUPE_ppa023041mg N 0.857
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.882
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.858
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.882
SapurV1A.0441s0120 Salix purpurea SapurV1A.0441s0120 N 0.858
SapurV1A.0694s0030 Salix purpurea SapurV1A.0694s0030 N 0.857
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.858
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.882
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.858
Sb07g004980 Sorghum bicolor Sb07g004980 N 0.858
Sb09g024720 Sorghum bicolor Sb09g024720 N 0.858
Si001796m.g Setaria italica Si001796m.g N 0.858
Si010139m.g Setaria italica Si010139m.g N 0.858
Si013853m.g Setaria italica Si013853m.g N 0.858
Si022548m.g Setaria italica Si022548m.g N 0.858
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.858
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.882
Solyc03g031450.2 Solanum lycopersicum Solyc03g031450.2 N 0.858
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.882
Solyc07g063830.2 Solanum lycopersicum Solyc07g063830.2 N 0.857
Solyc10g006640.2 Solanum lycopersicum Solyc10g006640.2 N 0.857
TCM_030051 Theobroma cacao TCM_030051 N 0.858
TCM_031172 Theobroma cacao TCM_031172 N 0.857
TCM_034098 Theobroma cacao TCM_034098 N 0.882
Thhalv10020666m.g Eutrema salsugineum Thhalv10020666m.g N 0.857
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.893
Traes_2AL_70AE1B8B8 Triticum aestivum Traes_2AL_70AE1B8B8 N 0.858
Traes_2BL_A014BCC51 Triticum aestivum Traes_2BL_A014BCC51 N 0.858
Traes_2BL_E82F7902D Triticum aestivum Traes_2BL_E82F7902D N 0.858
Traes_2DL_DCD7B13A8 Triticum aestivum Traes_2DL_DCD7B13A8 N 0.858
TRIUR3_00968 Triticum urartu TRIUR3_00968 N 0.858
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.858
VIT_04s0023g02410 Vitis vinifera VIT_04s0023g02410 N 0.858
VIT_05s0094g00480 Vitis vinifera VIT_05s0094g00480 N 0.860
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.882
VIT_19s0014g04670 Vitis vinifera VIT_19s0014g04670 N 0.857