Pavir.Ga00384 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ga00384 T050787_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga00384.1.p bHLH 334 374

Links

Other bHLH family TFs
Other Panicum virgatum TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.914
BGIOSGA017200 Oryza indica BGIOSGA017200 N 0.914
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.914
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.914
F775_12027 Aegilops tauschii F775_12027 N 0.914
F775_20405 Aegilops tauschii F775_20405 N 0.914
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.914
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.914
GRMZM2G004732 Zea mays GRMZM2G004732 N 0.914
GRMZM2G155217 Zea mays GRMZM2G155217 N 0.914
GRMZM2G313058 Zea mays GRMZM2G313058 N 0.914
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.914
GSMUA_Achr10G04860_001 Musa acuminata GSMUA_Achr10G04860_001 N 0.914
GSMUA_Achr11G18680_001 Musa acuminata GSMUA_Achr11G18680_001 N 0.914
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.914
GSMUA_Achr5G26430_001 Musa acuminata GSMUA_Achr5G26430_001 N 0.914
GSMUA_Achr9G12100_001 Musa acuminata GSMUA_Achr9G12100_001 N 0.914
GSMUA_Achr9G24670_001 Musa acuminata GSMUA_Achr9G24670_001 N 0.914
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.914
MLOC_37666 Hordeum vulgare MLOC_37666 N 0.914
MLOC_72940 Hordeum vulgare MLOC_72940 N 0.914
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.914
OB04G33270 Oryza brachyantha OB04G33270 N 0.914
OB05G29420 Oryza brachyantha OB05G29420 N 0.914
OB08G14900 Oryza brachyantha OB08G14900 N 0.914
OBART01G33360 Oryza barthii OBART01G33360 N 0.914
OBART04G24870 Oryza barthii OBART04G24870 N 0.914
OBART05G21860 Oryza barthii OBART05G21860 N 0.914
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.914
OGLUM04G26290 Oryza glumaepatula OGLUM04G26290 N 0.914
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.914
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.914
OLONG_026655 Oryza longistaminata OLONG_026655 N 0.914
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.914
OMERI04G21930 Oryza meridionalis OMERI04G21930 N 0.914
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.914
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.914
ONIVA03G13290 Oryza nivara ONIVA03G13290 N 0.914
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.914
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.914
OPUNC04G23980 Oryza punctata OPUNC04G23980 N 0.914
ORGLA04G0213700 Oryza glaberrima ORGLA04G0213700 N 0.914
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.914
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.914
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.914
ORUFI06G19010 Oryza rufipogon ORUFI06G19010 N 0.914
OS04G0631600 Oryza sativa OS04G0631600 N 0.914
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.914
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.914
POPTR_0005s12150 Populus trichocarpa POPTR_0005s12150 N 0.914
POPTR_0007s13360 Populus trichocarpa POPTR_0007s13360 N 0.914
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.914
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.914
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.914
Sb07g004980 Sorghum bicolor Sb07g004980 N 0.914
Sb09g024720 Sorghum bicolor Sb09g024720 N 0.914
Si001796m.g Setaria italica Si001796m.g N 0.914
Si010139m.g Setaria italica Si010139m.g N 0.914
Si013853m.g Setaria italica Si013853m.g N 0.914
Si022548m.g Setaria italica Si022548m.g N 0.914
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.914
Solyc03g031450.2 Solanum lycopersicum Solyc03g031450.2 N 0.914
TCM_030051 Theobroma cacao TCM_030051 N 0.914
Traes_2AL_70AE1B8B8 Triticum aestivum Traes_2AL_70AE1B8B8 N 0.914
Traes_2BL_A014BCC51 Triticum aestivum Traes_2BL_A014BCC51 N 0.914
Traes_2BL_E82F7902D Triticum aestivum Traes_2BL_E82F7902D N 0.914
Traes_2DL_DCD7B13A8 Triticum aestivum Traes_2DL_DCD7B13A8 N 0.914
TRIUR3_00968 Triticum urartu TRIUR3_00968 N 0.914
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.914
VIT_04s0023g02410 Vitis vinifera VIT_04s0023g02410 N 0.914
Ca_00214 Cicer arietinum Ca_00214 N 0.914
Pm009855 Prunus mume Pm009855 N 0.914
29842.m003704 Ricinus communis 29842.m003704 N 0.914
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.914
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.914
mgf008488m Mimulus guttatus mgf008488m N 0.914
mgf016565m Mimulus guttatus mgf016565m N 0.914
Aquca_028_00271 Aquilegia coerulea Aquca_028_00271 N 0.914
Ciclev10015039m.g Citrus clementina Ciclev10015039m.g N 0.914
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.914
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.914
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.914
Gorai.006G085000 Gossypium raimondii Gorai.006G085000 N 0.914
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.914
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.914
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.914
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.914
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.914
Lus10025987.g Linum usitatissimum Lus10025987.g N 0.914
MDP0000301999 Malus domestica MDP0000301999 N 0.914
orange1.1g011373m.g Citrus sinensis orange1.1g011373m.g N 0.914
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.914
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.914
Pavir.J10443 Panicum virgatum Pavir.J10443 N 0.914
Pavir.J13928 Panicum virgatum Pavir.J13928 N 0.914
Pavir.J25904 Panicum virgatum Pavir.J25904 N 0.914
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.914
SapurV1A.0441s0120 Salix purpurea SapurV1A.0441s0120 N 0.914
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.914
PK14284.1 Cannabis sativa PK14284.1 N 0.914
LjSGA_014369.1 Lotus japonicus LjSGA_014369.1 N 0.914
PDK_20s1457351g001 Phoenix dactylifera PDK_20s1457351g001 N 0.914
BHLH123 Arabidopsis thaliana AT3G20640 N 0.913
Bo01052s010 Brassica oleracea Bo01052s010 N 0.913
Bo3g076150 Brassica oleracea Bo3g076150 N 0.913
Bra001798 Brassica rapa Bra001798 N 0.913
GLYMA06G40760 Glycine max GLYMA06G40760 N 0.913
GLYMA12G17630 Glycine max GLYMA12G17630 N 0.913
GLYMA12G34490 Glycine max GLYMA12G34490 N 0.913
GLYMA13G36010 Glycine max GLYMA13G36010 N 0.913
MTR_2g081820 Medicago truncatula MTR_2g081820 N 0.913
MTR_8g466800 Medicago truncatula MTR_8g466800 N 0.913
PGSC0003DMG400005064 Solanum tuberosum PGSC0003DMG400005064 N 0.913
PGSC0003DMG400019236 Solanum tuberosum PGSC0003DMG400019236 N 0.913
PGSC0003DMG400025020 Solanum tuberosum PGSC0003DMG400025020 N 0.913
POPTR_0011s13320 Populus trichocarpa POPTR_0011s13320 N 0.913
PRUPE_ppa023041mg Prunus persica PRUPE_ppa023041mg N 0.913
Solyc07g063830.2 Solanum lycopersicum Solyc07g063830.2 N 0.913
Solyc10g006640.2 Solanum lycopersicum Solyc10g006640.2 N 0.913
TCM_031172 Theobroma cacao TCM_031172 N 0.913
VIT_19s0014g04670 Vitis vinifera VIT_19s0014g04670 N 0.913
Ca_06936 Cicer arietinum Ca_06936 N 0.913
Ca_19891 Cicer arietinum Ca_19891 N 0.913
Cla003883 Citrullus lanatus Cla003883 N 0.913
Pm011692 Prunus mume Pm011692 N 0.913
27733.m000033 Ricinus communis 27733.m000033 N 0.913
cassava28105.m1 Manihot esculenta cassava28105.m1 N 0.913
cassava36956.valid.m1 Manihot esculenta cassava36956.valid.m1 N 0.913
Cucsa.059580 Cucumis sativus Cucsa.059580 N 0.913
mgf001258m Mimulus guttatus mgf001258m N 0.913
Bostr.19424s0583 Boechera stricta Bostr.19424s0583 N 0.913
Cagra.0316s0001 Capsella grandiflora Cagra.0316s0001 N 0.913
Carubv10013632m.g Capsella rubella Carubv10013632m.g N 0.913
Ciclev10008228m.g Citrus clementina Ciclev10008228m.g N 0.913
Eucgr.F03384 Eucalyptus grandis Eucgr.F03384 N 0.913
evm.TU.supercontig_12.1 Carica papaya evm.TU.supercontig_12.1 N 0.913
gene03259-v1.0-hybrid Fragaria vesca gene03259-v1.0-hybrid N 0.913
Gorai.002G079200 Gossypium raimondii Gorai.002G079200 N 0.913
Gorai.009G429100 Gossypium raimondii Gorai.009G429100 N 0.913
Lus10038550.g Linum usitatissimum Lus10038550.g N 0.913
MDP0000295440 Malus domestica MDP0000295440 N 0.913
MDP0000296508 Malus domestica MDP0000296508 N 0.913
SapurV1A.0694s0030 Salix purpurea SapurV1A.0694s0030 N 0.913
Thhalv10020666m.g Eutrema salsugineum Thhalv10020666m.g N 0.913
PK22680.1 Cannabis sativa PK22680.1 N 0.913
Cucsa.125970 Cucumis sativus Cucsa.125970 N 0.911
GLYMA16G24661 Glycine max GLYMA16G24661 N 0.902
Bra035761 Brassica rapa Bra035761 N 0.901
cassava21180.m1 Manihot esculenta cassava21180.m1 N 0.894
BHLH110 Arabidopsis thaliana AT1G27660 N 0.890
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.890
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.890
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.890
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.890
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.890
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.890
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.890
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.890
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.890
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.890
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.890
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.890
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.890
TCM_034098 Theobroma cacao TCM_034098 N 0.890
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.890
Ca_04928 Cicer arietinum Ca_04928 N 0.890
Cla021101 Citrullus lanatus Cla021101 N 0.890
Pm005865 Prunus mume Pm005865 N 0.890
30170.m014085 Ricinus communis 30170.m014085 N 0.890
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.890
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.890
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.890
mgf013138m Mimulus guttatus mgf013138m N 0.890
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.890
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N 0.890
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.890
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.890
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.890
MDP0000168695 Malus domestica MDP0000168695 N 0.890
MDP0000262020 Malus domestica MDP0000262020 N 0.890
MDP0000687814 Malus domestica MDP0000687814 N 0.890
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.890
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.890
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.890
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.890
SapurV1A.0658s0070 Salix purpurea SapurV1A.0658s0070 N 0.889
SapurV1A.2213s0020 Salix purpurea SapurV1A.2213s0020 N 0.889
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.888
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N 0.883
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N 0.883
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N 0.883
TCM_019871 Theobroma cacao TCM_019871 N 0.883
Pm007388 Prunus mume Pm007388 N 0.883
28405.m000015 Ricinus communis 28405.m000015 N 0.883
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N 0.883
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N 0.883
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N 0.883
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N 0.883
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.879
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.879
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.879
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.879
Carubv10003683m.g Capsella rubella Carubv10003683m.g N 0.879
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.879
BHLH112 Arabidopsis thaliana AT1G61660 N 0.876
Bo1g098400 Brassica oleracea Bo1g098400 N 0.876
Bo9g041010 Brassica oleracea Bo9g041010 N 0.876
Bra027080 Brassica rapa Bra027080 N 0.876
Bra031413 Brassica rapa Bra031413 N 0.876
fgenesh2_kg.2__291__AT1G61660.1 Arabidopsis lyrata fgenesh2_kg.2__291__AT1G61660.1 N 0.876
Bostr.10040s0018 Boechera stricta Bostr.10040s0018 N 0.876
Cagra.2507s0001 Capsella grandiflora Cagra.2507s0001 N 0.876
Carubv10020420m.g Capsella rubella Carubv10020420m.g N 0.876
Thhalv10023487m.g Eutrema salsugineum Thhalv10023487m.g N 0.876
BHLH103 Arabidopsis thaliana AT4G21340 N 0.869
Bo1g024090 Brassica oleracea Bo1g024090 N 0.869
Bra013520 Brassica rapa Bra013520 N 0.869
Bostr.10689s0083 Boechera stricta Bostr.10689s0083 N 0.869
Bo9g076250 Brassica oleracea Bo9g076250 N 0.867
Bra029562 Brassica rapa Bra029562 N 0.867
Eucgr.D00881 Eucalyptus grandis Eucgr.D00881 N 0.867
Bo1g108770 Brassica oleracea Bo1g108770 N 0.860
Bo1g108780 Brassica oleracea Bo1g108780 N 0.860
Bra023939 Brassica rapa Bra023939 N 0.860
cassava33658.m1 Manihot esculenta cassava33658.m1 N 0.859
chr5.CM0200.1030.nc Lotus japonicus chr5.CM0200.1030.nc N 0.859
VIT_05s0094g00480 Vitis vinifera VIT_05s0094g00480 N 0.858
Cla011068 Citrullus lanatus Cla011068 N 0.858
Cucsa.095280 Cucumis sativus Cucsa.095280 N 0.858
Bostr.26675s0184 Boechera stricta Bostr.26675s0184 N 0.858
Cagra.1062s0002 Capsella grandiflora Cagra.1062s0002 N 0.858
Carubv10006994m.g Capsella rubella Carubv10006994m.g N 0.858