Carubv10003683m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10003683m.g T049336_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003683m bHLH 170 210

Links

Other bHLH family TFs
Other Capsella rubella TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.914
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.914
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.914
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.914
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.914
BHLH110 Arabidopsis thaliana AT1G27660 N 0.903
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.903
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.903
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.903
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.903
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.903
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.903
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.903
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.903
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.903
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.903
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.903
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.903
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.903
TCM_034098 Theobroma cacao TCM_034098 N 0.903
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.903
Ca_04928 Cicer arietinum Ca_04928 N 0.903
Cla021101 Citrullus lanatus Cla021101 N 0.903
Pm005865 Prunus mume Pm005865 N 0.903
30170.m014085 Ricinus communis 30170.m014085 N 0.903
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.903
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.903
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.903
mgf013138m Mimulus guttatus mgf013138m N 0.903
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.903
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N 0.903
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.903
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.903
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.903
MDP0000168695 Malus domestica MDP0000168695 N 0.903
MDP0000262020 Malus domestica MDP0000262020 N 0.903
MDP0000687814 Malus domestica MDP0000687814 N 0.903
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.903
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.903
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.903
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.903
Bo9g076250 Brassica oleracea Bo9g076250 N 0.902
Bra029562 Brassica rapa Bra029562 N 0.902
Eucgr.D00881 Eucalyptus grandis Eucgr.D00881 N 0.902
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.901
Cagra.1062s0002 Capsella grandiflora Cagra.1062s0002 N 0.893
Carubv10006994m.g Capsella rubella Carubv10006994m.g N 0.893
chr5.CM0200.1030.nc Lotus japonicus chr5.CM0200.1030.nc N 0.883
BHLH103 Arabidopsis thaliana AT4G21340 N 0.882
Bra013520 Brassica rapa Bra013520 N 0.882
VIT_05s0094g00480 Vitis vinifera VIT_05s0094g00480 N 0.882
Bostr.10689s0083 Boechera stricta Bostr.10689s0083 N 0.882
Bostr.26675s0184 Boechera stricta Bostr.26675s0184 N 0.882
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.879
BGIOSGA017200 Oryza indica BGIOSGA017200 N 0.879
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.879
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.879
F775_12027 Aegilops tauschii F775_12027 N 0.879
F775_20405 Aegilops tauschii F775_20405 N 0.879
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.879
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.879
GRMZM2G004732 Zea mays GRMZM2G004732 N 0.879
GRMZM2G155217 Zea mays GRMZM2G155217 N 0.879
GRMZM2G313058 Zea mays GRMZM2G313058 N 0.879
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.879
GSMUA_Achr10G04860_001 Musa acuminata GSMUA_Achr10G04860_001 N 0.879
GSMUA_Achr11G18680_001 Musa acuminata GSMUA_Achr11G18680_001 N 0.879
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.879
GSMUA_Achr5G26430_001 Musa acuminata GSMUA_Achr5G26430_001 N 0.879
GSMUA_Achr9G12100_001 Musa acuminata GSMUA_Achr9G12100_001 N 0.879
GSMUA_Achr9G24670_001 Musa acuminata GSMUA_Achr9G24670_001 N 0.879
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.879
MLOC_37666 Hordeum vulgare MLOC_37666 N 0.879
MLOC_72940 Hordeum vulgare MLOC_72940 N 0.879
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.879
OB04G33270 Oryza brachyantha OB04G33270 N 0.879
OB05G29420 Oryza brachyantha OB05G29420 N 0.879
OB08G14900 Oryza brachyantha OB08G14900 N 0.879
OBART01G33360 Oryza barthii OBART01G33360 N 0.879
OBART04G24870 Oryza barthii OBART04G24870 N 0.879
OBART05G21860 Oryza barthii OBART05G21860 N 0.879
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.879
OGLUM04G26290 Oryza glumaepatula OGLUM04G26290 N 0.879
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.879
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.879
OLONG_026655 Oryza longistaminata OLONG_026655 N 0.879
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.879
OMERI04G21930 Oryza meridionalis OMERI04G21930 N 0.879
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.879
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.879
ONIVA03G13290 Oryza nivara ONIVA03G13290 N 0.879
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.879
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.879
OPUNC04G23980 Oryza punctata OPUNC04G23980 N 0.879
ORGLA04G0213700 Oryza glaberrima ORGLA04G0213700 N 0.879
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.879
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.879
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.879
ORUFI06G19010 Oryza rufipogon ORUFI06G19010 N 0.879
OS04G0631600 Oryza sativa OS04G0631600 N 0.879
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.879
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.879
POPTR_0005s12150 Populus trichocarpa POPTR_0005s12150 N 0.879
POPTR_0007s13360 Populus trichocarpa POPTR_0007s13360 N 0.879
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.879
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.879
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.879
Sb07g004980 Sorghum bicolor Sb07g004980 N 0.879
Sb09g024720 Sorghum bicolor Sb09g024720 N 0.879
Si001796m.g Setaria italica Si001796m.g N 0.879
Si010139m.g Setaria italica Si010139m.g N 0.879
Si013853m.g Setaria italica Si013853m.g N 0.879
Si022548m.g Setaria italica Si022548m.g N 0.879
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.879
Solyc03g031450.2 Solanum lycopersicum Solyc03g031450.2 N 0.879
TCM_030051 Theobroma cacao TCM_030051 N 0.879
Traes_2AL_70AE1B8B8 Triticum aestivum Traes_2AL_70AE1B8B8 N 0.879
Traes_2BL_A014BCC51 Triticum aestivum Traes_2BL_A014BCC51 N 0.879
Traes_2BL_E82F7902D Triticum aestivum Traes_2BL_E82F7902D N 0.879
Traes_2DL_DCD7B13A8 Triticum aestivum Traes_2DL_DCD7B13A8 N 0.879
TRIUR3_00968 Triticum urartu TRIUR3_00968 N 0.879
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.879
VIT_04s0023g02410 Vitis vinifera VIT_04s0023g02410 N 0.879
Ca_00214 Cicer arietinum Ca_00214 N 0.879
Pm009855 Prunus mume Pm009855 N 0.879
29842.m003704 Ricinus communis 29842.m003704 N 0.879
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.879
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.879
mgf008488m Mimulus guttatus mgf008488m N 0.879
mgf016565m Mimulus guttatus mgf016565m N 0.879
Aquca_028_00271 Aquilegia coerulea Aquca_028_00271 N 0.879
Ciclev10015039m.g Citrus clementina Ciclev10015039m.g N 0.879
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.879
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.879
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.879
Gorai.006G085000 Gossypium raimondii Gorai.006G085000 N 0.879
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.879
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.879
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.879
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.879
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.879
Lus10025987.g Linum usitatissimum Lus10025987.g N 0.879
MDP0000301999 Malus domestica MDP0000301999 N 0.879
orange1.1g011373m.g Citrus sinensis orange1.1g011373m.g N 0.879
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.879
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.879
Pavir.Ga00384 Panicum virgatum Pavir.Ga00384 N 0.879
Pavir.J10443 Panicum virgatum Pavir.J10443 N 0.879
Pavir.J13928 Panicum virgatum Pavir.J13928 N 0.879
Pavir.J25904 Panicum virgatum Pavir.J25904 N 0.879
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.879
SapurV1A.0441s0120 Salix purpurea SapurV1A.0441s0120 N 0.879
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.879
PK14284.1 Cannabis sativa PK14284.1 N 0.879
LjSGA_014369.1 Lotus japonicus LjSGA_014369.1 N 0.879
PDK_20s1457351g001 Phoenix dactylifera PDK_20s1457351g001 N 0.879
BHLH123 Arabidopsis thaliana AT3G20640 N 0.878
Bo01052s010 Brassica oleracea Bo01052s010 N 0.878
Bo3g076150 Brassica oleracea Bo3g076150 N 0.878
Bra001798 Brassica rapa Bra001798 N 0.878
GLYMA06G40760 Glycine max GLYMA06G40760 N 0.878
GLYMA12G17630 Glycine max GLYMA12G17630 N 0.878
GLYMA12G34490 Glycine max GLYMA12G34490 N 0.878
GLYMA13G36010 Glycine max GLYMA13G36010 N 0.878
MTR_2g081820 Medicago truncatula MTR_2g081820 N 0.878
MTR_8g466800 Medicago truncatula MTR_8g466800 N 0.878
PGSC0003DMG400005064 Solanum tuberosum PGSC0003DMG400005064 N 0.878
PGSC0003DMG400019236 Solanum tuberosum PGSC0003DMG400019236 N 0.878
PGSC0003DMG400025020 Solanum tuberosum PGSC0003DMG400025020 N 0.878
POPTR_0011s13320 Populus trichocarpa POPTR_0011s13320 N 0.878
PRUPE_ppa023041mg Prunus persica PRUPE_ppa023041mg N 0.878
Solyc07g063830.2 Solanum lycopersicum Solyc07g063830.2 N 0.878
Solyc10g006640.2 Solanum lycopersicum Solyc10g006640.2 N 0.878
TCM_031172 Theobroma cacao TCM_031172 N 0.878
VIT_19s0014g04670 Vitis vinifera VIT_19s0014g04670 N 0.878
Ca_06936 Cicer arietinum Ca_06936 N 0.878
Ca_19891 Cicer arietinum Ca_19891 N 0.878
Cla003883 Citrullus lanatus Cla003883 N 0.878
Pm011692 Prunus mume Pm011692 N 0.878
27733.m000033 Ricinus communis 27733.m000033 N 0.878
cassava28105.m1 Manihot esculenta cassava28105.m1 N 0.878
cassava36956.valid.m1 Manihot esculenta cassava36956.valid.m1 N 0.878
Cucsa.059580 Cucumis sativus Cucsa.059580 N 0.878
mgf001258m Mimulus guttatus mgf001258m N 0.878
Bostr.19424s0583 Boechera stricta Bostr.19424s0583 N 0.878
Cagra.0316s0001 Capsella grandiflora Cagra.0316s0001 N 0.878
Carubv10013632m.g Capsella rubella Carubv10013632m.g N 0.878
Ciclev10008228m.g Citrus clementina Ciclev10008228m.g N 0.878
Eucgr.F03384 Eucalyptus grandis Eucgr.F03384 N 0.878
evm.TU.supercontig_12.1 Carica papaya evm.TU.supercontig_12.1 N 0.878
gene03259-v1.0-hybrid Fragaria vesca gene03259-v1.0-hybrid N 0.878
Gorai.002G079200 Gossypium raimondii Gorai.002G079200 N 0.878
Gorai.009G429100 Gossypium raimondii Gorai.009G429100 N 0.878
Lus10038550.g Linum usitatissimum Lus10038550.g N 0.878
MDP0000295440 Malus domestica MDP0000295440 N 0.878
MDP0000296508 Malus domestica MDP0000296508 N 0.878
SapurV1A.0694s0030 Salix purpurea SapurV1A.0694s0030 N 0.878
Thhalv10020666m.g Eutrema salsugineum Thhalv10020666m.g N 0.878
PK22680.1 Cannabis sativa PK22680.1 N 0.878
Cucsa.125970 Cucumis sativus Cucsa.125970 N 0.876
GLYMA16G24661 Glycine max GLYMA16G24661 N 0.866
Bra035761 Brassica rapa Bra035761 N 0.865
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N 0.859
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N 0.859
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N 0.859
TCM_019871 Theobroma cacao TCM_019871 N 0.859
Pm007388 Prunus mume Pm007388 N 0.859
28405.m000015 Ricinus communis 28405.m000015 N 0.859
cassava21180.m1 Manihot esculenta cassava21180.m1 N 0.859
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N 0.859
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N 0.859
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N 0.859
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N 0.859
BHLH154 Arabidopsis thaliana AT2G31730 N 0.858
Bo1g024090 Brassica oleracea Bo1g024090 N 0.858
Bo4g049510 Brassica oleracea Bo4g049510 N 0.857
Bra005644 Brassica rapa Bra005644 N 0.857
Thhalv10017421m.g Eutrema salsugineum Thhalv10017421m.g N 0.857
SapurV1A.0658s0070 Salix purpurea SapurV1A.0658s0070 N 0.854
SapurV1A.2213s0020 Salix purpurea SapurV1A.2213s0020 N 0.854
Bo3g026410 Brassica oleracea Bo3g026410 N 0.846
BHLH112 Arabidopsis thaliana AT1G61660 N 0.841
Bo1g098400 Brassica oleracea Bo1g098400 N 0.841
Bo9g041010 Brassica oleracea Bo9g041010 N 0.841
Bra027080 Brassica rapa Bra027080 N 0.841
Bra031413 Brassica rapa Bra031413 N 0.841
fgenesh2_kg.2__291__AT1G61660.1 Arabidopsis lyrata fgenesh2_kg.2__291__AT1G61660.1 N 0.841
Bostr.10040s0018 Boechera stricta Bostr.10040s0018 N 0.841
Cagra.2507s0001 Capsella grandiflora Cagra.2507s0001 N 0.841
Carubv10020420m.g Capsella rubella Carubv10020420m.g N 0.841
Thhalv10023487m.g Eutrema salsugineum Thhalv10023487m.g N 0.841