28405.m000015 (Ricinus communis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 28405.m000015 T047834_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
28405.m000015 bHLH 9 53

Links

Other bHLH family TFs
Other Ricinus communis TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N 0.914
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N 0.914
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N 0.914
TCM_019871 Theobroma cacao TCM_019871 N 0.914
Pm007388 Prunus mume Pm007388 N 0.914
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N 0.914
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N 0.914
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N 0.914
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N 0.914
cassava21180.m1 Manihot esculenta cassava21180.m1 N 0.903
Cla011068 Citrullus lanatus Cla011068 N 0.890
Cucsa.095280 Cucumis sativus Cucsa.095280 N 0.890
VIT_05s0094g00480 Vitis vinifera VIT_05s0094g00480 N 0.889
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.883
BGIOSGA017200 Oryza indica BGIOSGA017200 N 0.883
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.883
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.883
F775_12027 Aegilops tauschii F775_12027 N 0.883
F775_20405 Aegilops tauschii F775_20405 N 0.883
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.883
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.883
GRMZM2G004732 Zea mays GRMZM2G004732 N 0.883
GRMZM2G155217 Zea mays GRMZM2G155217 N 0.883
GRMZM2G313058 Zea mays GRMZM2G313058 N 0.883
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.883
GSMUA_Achr10G04860_001 Musa acuminata GSMUA_Achr10G04860_001 N 0.883
GSMUA_Achr11G18680_001 Musa acuminata GSMUA_Achr11G18680_001 N 0.883
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.883
GSMUA_Achr5G26430_001 Musa acuminata GSMUA_Achr5G26430_001 N 0.883
GSMUA_Achr9G12100_001 Musa acuminata GSMUA_Achr9G12100_001 N 0.883
GSMUA_Achr9G24670_001 Musa acuminata GSMUA_Achr9G24670_001 N 0.883
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.883
MLOC_37666 Hordeum vulgare MLOC_37666 N 0.883
MLOC_72940 Hordeum vulgare MLOC_72940 N 0.883
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.883
OB04G33270 Oryza brachyantha OB04G33270 N 0.883
OB05G29420 Oryza brachyantha OB05G29420 N 0.883
OB08G14900 Oryza brachyantha OB08G14900 N 0.883
OBART01G33360 Oryza barthii OBART01G33360 N 0.883
OBART04G24870 Oryza barthii OBART04G24870 N 0.883
OBART05G21860 Oryza barthii OBART05G21860 N 0.883
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.883
OGLUM04G26290 Oryza glumaepatula OGLUM04G26290 N 0.883
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.883
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.883
OLONG_026655 Oryza longistaminata OLONG_026655 N 0.883
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.883
OMERI04G21930 Oryza meridionalis OMERI04G21930 N 0.883
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.883
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.883
ONIVA03G13290 Oryza nivara ONIVA03G13290 N 0.883
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.883
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.883
OPUNC04G23980 Oryza punctata OPUNC04G23980 N 0.883
ORGLA04G0213700 Oryza glaberrima ORGLA04G0213700 N 0.883
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.883
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.883
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.883
ORUFI06G19010 Oryza rufipogon ORUFI06G19010 N 0.883
OS04G0631600 Oryza sativa OS04G0631600 N 0.883
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.883
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.883
POPTR_0005s12150 Populus trichocarpa POPTR_0005s12150 N 0.883
POPTR_0007s13360 Populus trichocarpa POPTR_0007s13360 N 0.883
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.883
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.883
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.883
Sb07g004980 Sorghum bicolor Sb07g004980 N 0.883
Sb09g024720 Sorghum bicolor Sb09g024720 N 0.883
Si001796m.g Setaria italica Si001796m.g N 0.883
Si010139m.g Setaria italica Si010139m.g N 0.883
Si013853m.g Setaria italica Si013853m.g N 0.883
Si022548m.g Setaria italica Si022548m.g N 0.883
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.883
Solyc03g031450.2 Solanum lycopersicum Solyc03g031450.2 N 0.883
TCM_030051 Theobroma cacao TCM_030051 N 0.883
Traes_2AL_70AE1B8B8 Triticum aestivum Traes_2AL_70AE1B8B8 N 0.883
Traes_2BL_A014BCC51 Triticum aestivum Traes_2BL_A014BCC51 N 0.883
Traes_2BL_E82F7902D Triticum aestivum Traes_2BL_E82F7902D N 0.883
Traes_2DL_DCD7B13A8 Triticum aestivum Traes_2DL_DCD7B13A8 N 0.883
TRIUR3_00968 Triticum urartu TRIUR3_00968 N 0.883
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.883
VIT_04s0023g02410 Vitis vinifera VIT_04s0023g02410 N 0.883
Ca_00214 Cicer arietinum Ca_00214 N 0.883
Pm009855 Prunus mume Pm009855 N 0.883
29842.m003704 Ricinus communis 29842.m003704 N 0.883
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.883
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.883
mgf008488m Mimulus guttatus mgf008488m N 0.883
mgf016565m Mimulus guttatus mgf016565m N 0.883
Aquca_028_00271 Aquilegia coerulea Aquca_028_00271 N 0.883
Ciclev10015039m.g Citrus clementina Ciclev10015039m.g N 0.883
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.883
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.883
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.883
Gorai.006G085000 Gossypium raimondii Gorai.006G085000 N 0.883
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.883
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.883
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.883
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.883
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.883
Lus10025987.g Linum usitatissimum Lus10025987.g N 0.883
MDP0000301999 Malus domestica MDP0000301999 N 0.883
orange1.1g011373m.g Citrus sinensis orange1.1g011373m.g N 0.883
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.883
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.883
Pavir.Ga00384 Panicum virgatum Pavir.Ga00384 N 0.883
Pavir.J10443 Panicum virgatum Pavir.J10443 N 0.883
Pavir.J13928 Panicum virgatum Pavir.J13928 N 0.883
Pavir.J25904 Panicum virgatum Pavir.J25904 N 0.883
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.883
SapurV1A.0441s0120 Salix purpurea SapurV1A.0441s0120 N 0.883
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.883
PK14284.1 Cannabis sativa PK14284.1 N 0.883
LjSGA_014369.1 Lotus japonicus LjSGA_014369.1 N 0.883
PDK_20s1457351g001 Phoenix dactylifera PDK_20s1457351g001 N 0.883
BHLH123 Arabidopsis thaliana AT3G20640 N 0.882
Bo01052s010 Brassica oleracea Bo01052s010 N 0.882
Bo3g076150 Brassica oleracea Bo3g076150 N 0.882
Bra001798 Brassica rapa Bra001798 N 0.882
GLYMA06G40760 Glycine max GLYMA06G40760 N 0.882
GLYMA12G17630 Glycine max GLYMA12G17630 N 0.882
GLYMA12G34490 Glycine max GLYMA12G34490 N 0.882
GLYMA13G36010 Glycine max GLYMA13G36010 N 0.882
MTR_2g081820 Medicago truncatula MTR_2g081820 N 0.882
MTR_8g466800 Medicago truncatula MTR_8g466800 N 0.882
PGSC0003DMG400005064 Solanum tuberosum PGSC0003DMG400005064 N 0.882
PGSC0003DMG400019236 Solanum tuberosum PGSC0003DMG400019236 N 0.882
PGSC0003DMG400025020 Solanum tuberosum PGSC0003DMG400025020 N 0.882
POPTR_0011s13320 Populus trichocarpa POPTR_0011s13320 N 0.882
PRUPE_ppa023041mg Prunus persica PRUPE_ppa023041mg N 0.882
Solyc07g063830.2 Solanum lycopersicum Solyc07g063830.2 N 0.882
Solyc10g006640.2 Solanum lycopersicum Solyc10g006640.2 N 0.882
TCM_031172 Theobroma cacao TCM_031172 N 0.882
VIT_19s0014g04670 Vitis vinifera VIT_19s0014g04670 N 0.882
Ca_06936 Cicer arietinum Ca_06936 N 0.882
Ca_19891 Cicer arietinum Ca_19891 N 0.882
Cla003883 Citrullus lanatus Cla003883 N 0.882
Pm011692 Prunus mume Pm011692 N 0.882
27733.m000033 Ricinus communis 27733.m000033 N 0.882
cassava28105.m1 Manihot esculenta cassava28105.m1 N 0.882
cassava36956.valid.m1 Manihot esculenta cassava36956.valid.m1 N 0.882
Cucsa.059580 Cucumis sativus Cucsa.059580 N 0.882
mgf001258m Mimulus guttatus mgf001258m N 0.882
Bostr.19424s0583 Boechera stricta Bostr.19424s0583 N 0.882
Cagra.0316s0001 Capsella grandiflora Cagra.0316s0001 N 0.882
Carubv10013632m.g Capsella rubella Carubv10013632m.g N 0.882
Ciclev10008228m.g Citrus clementina Ciclev10008228m.g N 0.882
Eucgr.F03384 Eucalyptus grandis Eucgr.F03384 N 0.882
evm.TU.supercontig_12.1 Carica papaya evm.TU.supercontig_12.1 N 0.882
gene03259-v1.0-hybrid Fragaria vesca gene03259-v1.0-hybrid N 0.882
Gorai.002G079200 Gossypium raimondii Gorai.002G079200 N 0.882
Gorai.009G429100 Gossypium raimondii Gorai.009G429100 N 0.882
Lus10038550.g Linum usitatissimum Lus10038550.g N 0.882
MDP0000295440 Malus domestica MDP0000295440 N 0.882
MDP0000296508 Malus domestica MDP0000296508 N 0.882
SapurV1A.0694s0030 Salix purpurea SapurV1A.0694s0030 N 0.882
Thhalv10020666m.g Eutrema salsugineum Thhalv10020666m.g N 0.882
PK22680.1 Cannabis sativa PK22680.1 N 0.882
Cucsa.125970 Cucumis sativus Cucsa.125970 N 0.879
chr5.CM0200.1030.nc Lotus japonicus chr5.CM0200.1030.nc N 0.879
Bostr.26675s0184 Boechera stricta Bostr.26675s0184 N 0.878
GLYMA16G24661 Glycine max GLYMA16G24661 N 0.870
Bra035761 Brassica rapa Bra035761 N 0.869
cassava33658.m1 Manihot esculenta cassava33658.m1 N 0.868
Gorai.011G135700 Gossypium raimondii Gorai.011G135700 N 0.868
BHLH154 Arabidopsis thaliana AT2G31730 N 0.866
Bo4g049510 Brassica oleracea Bo4g049510 N 0.865
Bra005644 Brassica rapa Bra005644 N 0.865
Thhalv10017421m.g Eutrema salsugineum Thhalv10017421m.g N 0.865
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.859
BHLH110 Arabidopsis thaliana AT1G27660 N 0.859
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.859
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.859
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.859
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.859
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.859
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.859
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.859
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.859
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.859
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.859
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.859
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.859
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.859
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.859
TCM_034098 Theobroma cacao TCM_034098 N 0.859
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.859
Ca_04928 Cicer arietinum Ca_04928 N 0.859
Cla021101 Citrullus lanatus Cla021101 N 0.859
Pm005865 Prunus mume Pm005865 N 0.859
30170.m014085 Ricinus communis 30170.m014085 N 0.859
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.859
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.859
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.859
mgf013138m Mimulus guttatus mgf013138m N 0.859
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.859
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.859
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.859
Carubv10003683m.g Capsella rubella Carubv10003683m.g N 0.859
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N 0.859
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.859
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.859
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.859
MDP0000168695 Malus domestica MDP0000168695 N 0.859
MDP0000262020 Malus domestica MDP0000262020 N 0.859
MDP0000687814 Malus domestica MDP0000687814 N 0.859
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.859
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.859
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.859
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.859
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.859
SapurV1A.0658s0070 Salix purpurea SapurV1A.0658s0070 N 0.857
SapurV1A.2213s0020 Salix purpurea SapurV1A.2213s0020 N 0.857
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.856
GLYMA02G15520 Glycine max GLYMA02G15520 N 0.855
MTR_4g087300 Medicago truncatula MTR_4g087300 N 0.855
Bo3g026410 Brassica oleracea Bo3g026410 N 0.853
Bo9g076250 Brassica oleracea Bo9g076250 N 0.847
Bra029562 Brassica rapa Bra029562 N 0.847
Eucgr.D00881 Eucalyptus grandis Eucgr.D00881 N 0.847
BHLH112 Arabidopsis thaliana AT1G61660 N 0.844
Bo1g098400 Brassica oleracea Bo1g098400 N 0.844
Bo9g041010 Brassica oleracea Bo9g041010 N 0.844
Bra027080 Brassica rapa Bra027080 N 0.844
Bra031413 Brassica rapa Bra031413 N 0.844
fgenesh2_kg.2__291__AT1G61660.1 Arabidopsis lyrata fgenesh2_kg.2__291__AT1G61660.1 N 0.844
Bostr.10040s0018 Boechera stricta Bostr.10040s0018 N 0.844
Cagra.2507s0001 Capsella grandiflora Cagra.2507s0001 N 0.844
Carubv10020420m.g Capsella rubella Carubv10020420m.g N 0.844
Thhalv10023487m.g Eutrema salsugineum Thhalv10023487m.g N 0.844