Pavir.Ab00856 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ab00856 T072309_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q39895_SOYBN
M10048_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_01 		0.789 0.873
Q39895_SOYBN
M10049_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_02 		0.789 0.873
HY5
M06790_2.00 		Arabidopsis thaliana
DNHGVTGACGTSDMN
NKHSACGTCABCDNH		 Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a 		0.789 0.836
HY5
M08407_2.00 		Arabidopsis thaliana
NNHGMCACGTGKCDNN
NNHGMCACGTGKCDNN		 ChIP-chip
Mathelier et al.(2014)
MA0551.1 		0.789 0.836
HY5
M09919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HY5_01 		0.789 0.836
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab00856.1.p bZIP 1 55

Links

Other bZIP family TFs
Other Panicum virgatum TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29848.m004650 Ricinus communis 29848.m004650 I 0.789
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I 0.789
HY5 Arabidopsis thaliana AT5G11260 D 0.789
BGIOSGA006916 Oryza indica BGIOSGA006916 I 0.789
Bo2g010330 Brassica oleracea Bo2g010330 I 0.789
Bo9g171430 Brassica oleracea Bo9g171430 I 0.789
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I 0.789
Bra008976 Brassica rapa Bra008976 I 0.789
Bra023317 Brassica rapa Bra023317 I 0.789
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I 0.789
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I 0.789
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I 0.789
Ca_21380 Cicer arietinum Ca_21380 I 0.789
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I 0.804
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I 0.789
Cla022656 Citrullus lanatus Cla022656 I 0.789
Cucsa.162360 Cucumis sativus Cucsa.162360 I 0.789
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I 0.789
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I 0.789
F775_05429 Aegilops tauschii F775_05429 I 0.789
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I 0.789
GLYMA08G41450 Glycine max GLYMA08G41450 I 0.789
GLYMA18G14750 Glycine max GLYMA18G14750 I 0.789
GRMZM2G137046 Zea mays GRMZM2G137046 I 0.803
GRMZM2G140355 Zea mays GRMZM2G140355 I 0.789
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I 0.789
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I 0.789
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I 0.785
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I 0.804
LPERR02G06800 Leersia perrieri LPERR02G06800 I 0.789
Lus10002900.g Linum usitatissimum Lus10002900.g I 0.789
MDP0000264514 Malus domestica MDP0000264514 I 0.789
MDP0000586302 Malus domestica MDP0000586302 I 0.789
mgf012104m Mimulus guttatus mgf012104m I 0.791
MTR_3g436010 Medicago truncatula MTR_3g436010 I 0.789
OB02G17160 Oryza brachyantha OB02G17160 I 0.789
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I 0.789
OLONG_023968 Oryza longistaminata OLONG_023968 I 0.789
ONIVA02G09400 Oryza nivara ONIVA02G09400 I 0.789
OPUNC02G07060 Oryza punctata OPUNC02G07060 I 0.789
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I 0.789
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I 0.789
OS02G0203000 Oryza sativa OS02G0203000 I 0.789
Pavir.Aa02966 Panicum virgatum Pavir.Aa02966 I 0.784
Pavir.Da00549 Panicum virgatum Pavir.Da00549 I 0.789
Pavir.Db01231 Panicum virgatum Pavir.Db01231 I 0.789
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I 0.789
PK17235.1 Cannabis sativa PK17235.1 I 0.789
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I 0.789
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I 0.789
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I 0.789
Q39895_SOYBN Glycine max Q39895_SOYBN D 0.789
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I 0.785
Sb04g007060 Sorghum bicolor Sb04g007060 I 0.803
Sb10g023420 Sorghum bicolor Sb10g023420 I 0.789
HY5 Arabidopsis lyrata scaffold_601144.1 I 0.789
Si018524m.g Setaria italica Si018524m.g I 0.803
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I 0.789
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I 0.789
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I 0.789
Traes_6AS_AFF47E71C Triticum aestivum Traes_6AS_AFF47E71C I 0.789
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I 0.789
HY5 Vitis vinifera VIT_04s0008g05210 I 0.789