PRDM1 (Cavia porcellus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCPOG00000014064 T089976_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.819 0.991
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.817 0.974
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.817 0.974
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.817 0.974
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.817 0.974
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.817 0.974
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.817 0.974
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.817 0.974
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.817 0.974
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.817 0.974
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.817 0.974
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.817 0.974
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.817 0.974
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.817 0.974
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.817 0.974
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.817 0.974
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000012667 C2H2 ZF 568 590
ENSCPOP00000012667 C2H2 ZF 596 618
ENSCPOP00000012667 C2H2 ZF 624 646
ENSCPOP00000012667 C2H2 ZF 652 674
ENSCPOP00000012667 C2H2 ZF 680 701

Links

Other C2H2 ZF family TFs
Other Cavia porcellus TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000003022 Astyanax mexicanus ENSAMXG00000003022 I
ATOH1 Bos taurus ENSBTAG00000002895 I
ENSBTAP00000003762-D1 Bos grunniens ENSBTAP00000003762-D1 I
ATOH1 Canis familiaris ENSCAFG00000010016 I
ATOH1 Choloepus hoffmanni ENSCHOG00000000748 I
ATOH1 Callithrix jacchus ENSCJAG00000022028 I
ENSCSAG00000000408 Chlorocebus sabaeus ENSCSAG00000000408 I
atoh1a Danio rerio ENSDARG00000055294 I
atoh1b Danio rerio ENSDARG00000099564 I
ATOH1 Dasypus novemcinctus ENSDNOG00000018799 I
ATOH1 Equus caballus ENSECAG00000001213 I
ATOH1 Echinops telfairi ENSETEG00000019807 I
ATOH1 Homo sapiens ENSG00000172238 D
ATOH1 Gorilla gorilla ENSGGOG00000001096 I
ENSGMOG00000019019 Gadus morhua ENSGMOG00000019019 I
ENSLACG00000005491 Latimeria chalumnae ENSLACG00000005491 I
ENSLACG00000013212 Latimeria chalumnae ENSLACG00000013212 I
ENSLAFG00000023246 Loxodonta africana ENSLAFG00000023246 I
ENSLOCG00000011944 Lepisosteus oculatus ENSLOCG00000011944 I
ENSLOCG00000017552 Lepisosteus oculatus ENSLOCG00000017552 I
ENSMEUG00000009664 Macropus eugenii ENSMEUG00000009664 I
ATOH1 Myotis lucifugus ENSMLUG00000008044 I
ATOH1 Macaca mulatta ENSMMUG00000002367 I
ATOH1 Monodelphis domestica ENSMODG00000019270 I
ENSMPUG00000019092 Mustela putorius furo ENSMPUG00000019092 I
Atoh1 Mus musculus ENSMUSG00000073043 D
ENSNLEG00000018621 Nomascus leucogenys ENSNLEG00000018621 I
ATOH1 Oryctolagus cuniculus ENSOCUG00000013154 I
ATOH1 Otolemur garnettii ENSOGAG00000030783 I
ENSONIG00000015058 Oreochromis niloticus ENSONIG00000015058 I
ENSONIG00000017784 Oreochromis niloticus ENSONIG00000017784 I
ATOH1 Ochotona princeps ENSOPRG00000008973 I
atoh1a Oryzias latipes ENSORLG00000004876 I
ENSP00000302216 Macaca fascicularis ENSP00000302216 I
ENSPANG00000000252 Papio anubis ENSPANG00000000252 I
ENSPFOG00000019101 Poecilia formosa ENSPFOG00000019101 I
ENSPFOG00000023785 Poecilia formosa ENSPFOG00000023785 I
ENSPPYG00000015283 Pongo abelii ENSPPYG00000015283 I
ATOH1 Pan troglodytes ENSPTRG00000031141 I
Atoh1 Rattus norvegicus ENSRNOG00000006383 I
ENSSHAG00000009094 Sarcophilus harrisii ENSSHAG00000009094 I
ENSSTOG00000009183 Ictidomys tridecemlineatus ENSSTOG00000009183 I
ATOH1 Tupaia belangeri ENSTBEG00000003291 I
atoh1a Tetraodon nigroviridis ENSTNIG00000017584 I
atoh1a Takifugu rubripes ENSTRUG00000012647 I
ENSXMAG00000009786 Xiphophorus maculatus ENSXMAG00000009786 I
ENSXMAG00000015349 Xiphophorus maculatus ENSXMAG00000015349 I
ISCW003667 Ixodes scapularis ISCW003667 I
Myotis_brandtii_ATOH1_10005345 Myotis brandtii Myotis_brandtii_ATOH1_10005345 I
Sakowv30002492m.g Saccoglossus kowalevskii Sakowv30002492m.g I
XP_002937284 Xenopus tropicalis XP_002937284 I