Snai1 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000042821 T101176_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00		 Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340		 (Direct) (Direct)
Snai1
M09002_2.00		 Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.822 0.967
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.822 0.967
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.822 0.967
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.822 0.967
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.822 0.967
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.822 0.967
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.822 0.967
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.822 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00781_2.00 C2H2 ZF 16 38
M00781_2.00 C2H2 ZF 42 64
M00781_2.00 C2H2 ZF 70 92
M00781_2.00 C2H2 ZF 98 119

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000050581 C2H2 ZF 154 176
ENSMUSP00000050581 C2H2 ZF 180 202
ENSMUSP00000050581 C2H2 ZF 208 230
ENSMUSP00000050581 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013544 Aedes aegypti AAEL013544 I
AATE009348 Anopheles atroparvus AATE009348 I
ACOM026725 Anopheles coluzzii ACOM026725 I
ACUA004708 Anopheles culicifacies ACUA004708 I
ACYPI004750 Acyrthosiphon pisum ACYPI004750 I
ADAC007677 Anopheles darlingi ADAC007677 I
AFAF007233 Anopheles farauti AFAF007233 I
AFUN008770 Anopheles funestus AFUN008770 I
AGAP009899 Anopheles gambiae AGAP009899 I
AMAM001551 Anopheles maculatus AMAM001551 I
AMEC014989 Anopheles melas AMEC014989 I
AMEM009101 Anopheles merus AMEM009101 I
AMIN006836 Anopheles minimus AMIN006836 I
ANCCAN_10701 Ancylostoma caninum ANCCAN_10701 I
ASIS008116 Anopheles sinensis ASIS008116 I
ASU_11043 Ascaris suum ASU_11043 I
Bm9026 Brugia malayi Bm9026 I
BXY_0483000 Bursaphelenchus xylophilus BXY_0483000 I
CGOC_0000202301 Cylicostephanus goldi CGOC_0000202301 I
CLEC001135 Cimex lectularius CLEC001135 I
EEL_0000130601 Elaeophora elaphi EEL_0000130601 I
klu Drosophila melanogaster FBgn0013469 D
GF23812 Drosophila ananassae FBgn0100806 I
GG13951 Drosophila erecta FBgn0106213 I
GH16578 Drosophila grimshawi FBgn0124049 I
GI13870 Drosophila mojavensis FBgn0136624 I
GL15747 Drosophila persimilis FBgn0153351 I
GM24789 Drosophila sechellia FBgn0179651 I
GD12837 Drosophila simulans FBgn0184562 I
GJ11729 Drosophila virilis FBgn0198983 I
GK18880 Drosophila willistoni FBgn0220878 I
GE20250 Drosophila yakuba FBgn0237569 I
GA23784 Drosophila pseudoobscura FBgn0245183 I
GB42180 Apis mellifera GB42180 I
GPLIN_001505900 Globodera pallida GPLIN_001505900 I
HCOI02146900 Haemonchus contortus HCOI02146900 I
HHAL008432-PA Halyomorpha halys HHAL008432-PA I
ISCW010362 Ixodes scapularis ISCW010362 I
L596_g19227 Steinernema carpocapsae L596_g19227 I
L798_04121 Zootermopsis nevadensis L798_04121 I
L892_g30369 Steinernema scapterisci L892_g30369 I
L898_g5287 Steinernema monticolum L898_g5287 I
LCUP004097 Lucilia cuprina LCUP004097 I
LDEC006538 Leptinotarsa decemlineata LDEC006538 I
LOAG_17546 Loa loa LOAG_17546 I
MDOA010298 Musca domestica MDOA010298 I
MhA1_Contig1668.frz3.gene4 Meloidogyne hapla MhA1_Contig1668.frz3.gene4 I
MhA1_Contig3096.frz3.gene1 Meloidogyne hapla MhA1_Contig3096.frz3.gene1 I
nAv.1.0.1.g02699 Acanthocheilonema viteae nAv.1.0.1.g02699 I
nDi.2.2.2.g07689 Dirofilaria immitis nDi.2.2.2.g07689 I
nLs.2.1.2.g02913 Litomosoides sigmodontis nLs.2.1.2.g02913 I
NV17203 Nasonia vitripennis NV17203 I
PHUM540640 Pediculus humanus PHUM540640 I
PPA26808 Pristionchus pacificus PPA26808 I
PPAI001591 Phlebotomus papatasi PPAI001591 I
PTRK_0001586500 Parastrongyloides trichosuri PTRK_0001586500 I
RPRC001140 Rhodnius prolixus RPRC001140 I
RSKR_0000914600 Rhabditophanes kr3021 RSKR_0000914600 N
scaffold108-EXSNAP2012.21 Pristionchus exspectatus scaffold108-EXSNAP2012.21 I
SMAR002322 Strigamia maritima SMAR002322 I
SPAL_0000289400 Strongyloides papillosus SPAL_0000289400 I
SVE_1611300 Strongyloides venezuelensis SVE_1611300 I
TC002783 Tribolium castaneum TC002783 I
WBGene00248644 Onchocerca volvulus WBGene00248644 I
YQE_09824 Dendroctonus ponderosae YQE_09824 I