Alligator_sinensis_CCG015471.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG015471.1 T133341_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HIC2
M02902_2.00 		Homo sapiens
RTGCCMVNN
NNBKGGCAY		 SELEX
Jolma et al.(2013)
HIC2_1 		0.825 0.974
Hic1
M00141_2.00 		Mus musculus
RTGCCMNBN
NVNKGGCAY		 PBM
Badis et al.(2009)
Hic1_2816 		0.793 0.861
Hic1
M02933_2.00 		Mus musculus
RTGCCAVCYBRTGCCAVC
GBTGGCAYVRGBTGGCAY		 SELEX
Jolma et al.(2013)
Hic1_1 		0.793 0.861
Hic1
M02934_2.00 		Mus musculus
RTGCCAVCN
NGBTGGCAY		 SELEX
Jolma et al.(2013)
Hic1_2 		0.793 0.861
Hic1
M09003_2.00 		Mus musculus
KGGCAMCCH
DGGKTGCCM		 Misc
Kulakovskiy et al.(2013)
HIC1_MOUSE.H11MO.0.C 		0.793 0.861
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG015471.1 C2H2 ZF 402 424
Alligator_sinensis_CCG015471.1 C2H2 ZF 460 482
Alligator_sinensis_CCG015471.1 C2H2 ZF 488 510
Alligator_sinensis_CCG015471.1 C2H2 ZF 516 538
Alligator_sinensis_CCG015471.1 C2H2 ZF 544 566

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG010485.1 Alligator sinensis Alligator_sinensis_CCG010485.1 I
Cmyd_10006231 Chelonia mydas Cmyd_10006231 I
ENSAMEG00000001482 Ailuropoda melanoleuca ENSAMEG00000001482 I
ENSAMXG00000004952 Astyanax mexicanus ENSAMXG00000004952 I
PRDM1 Canis familiaris ENSCAFG00000003694 I
PRDM1 Callithrix jacchus ENSCJAG00000006332 I
PRDM1 Cavia porcellus ENSCPOG00000014064 I
ENSCSAG00000014744 Chlorocebus sabaeus ENSCSAG00000014744 I
PRDM1 Equus caballus ENSECAG00000009044 I
PRDM1 Erinaceus europaeus ENSEEUG00000013222 I
PRDM1 Echinops telfairi ENSETEG00000019669 I
PRDM1 Felis catus ENSFCAG00000010755 I
PRDM1 Homo sapiens ENSG00000057657 D
PRDM1 Gorilla gorilla ENSGGOG00000001929 I
PRDM1 Loxodonta africana ENSLAFG00000013436 I
ENSMEUG00000000043 Macropus eugenii ENSMEUG00000000043 I
PRDM1 Microcebus murinus ENSMICG00000010329 I
PRDM1 Myotis lucifugus ENSMLUG00000014085 I
PRDM1 Macaca mulatta ENSMMUG00000021401 I
PRDM1 Monodelphis domestica ENSMODG00000018029 I
ENSMPUG00000009522 Mustela putorius furo ENSMPUG00000009522 I
Prdm1 Mus musculus ENSMUSG00000038151 D
ENSNLEG00000013211 Nomascus leucogenys ENSNLEG00000013211 I
PRDM1 Ornithorhynchus anatinus ENSOANG00000004176 I
PRDM1 Oryctolagus cuniculus ENSOCUG00000015495 I
PRDM1 Otolemur garnettii ENSOGAG00000014036 I
PRDM1 Ochotona princeps ENSOPRG00000006055 I
ENSP00000358092 Macaca fascicularis ENSP00000358092 I
ENSPANG00000016727 Papio anubis ENSPANG00000016727 I
ENSPPYG00000016879 Pongo abelii ENSPPYG00000016879 I
ENSPSIG00000002661 Pelodiscus sinensis ENSPSIG00000002661 I
PRDM1 Pteropus vampyrus ENSPVAG00000011732 I
Prdm1 Rattus norvegicus ENSRNOG00000000323 I
PRDM1 Sorex araneus ENSSARG00000004079 I
ENSSHAG00000010080 Sarcophilus harrisii ENSSHAG00000010080 I
PRDM1 Sus scrofa ENSSSCG00000004369 I
ENSSTOG00000016505 Ictidomys tridecemlineatus ENSSTOG00000016505 I
PRDM1 Tupaia belangeri ENSTBEG00000004089 I
ENSTNIG00000012300 Tetraodon nigroviridis ENSTNIG00000012300 I
ENSTSYG00000011666 Tarsius syrichta ENSTSYG00000011666 I
PRDM1 Tursiops truncatus ENSTTRG00000012894 I
Myotis_brandtii_PRDM1_10034696 Myotis brandtii Myotis_brandtii_PRDM1_10034696 I