Cmyd_10006231 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10006231 T134288_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.820 0.965
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.820 0.956
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.820 0.956
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.820 0.956
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.820 0.956
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.820 0.956
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.820 0.956
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.820 0.956
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.820 0.956
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.820 0.956
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.820 0.956
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.820 0.956
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.820 0.956
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.820 0.956
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.820 0.956
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.820 0.956
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10006231 C2H2 ZF 559 581
Cmyd_10006231 C2H2 ZF 587 609
Cmyd_10006231 C2H2 ZF 615 637
Cmyd_10006231 C2H2 ZF 643 665
Cmyd_10006231 C2H2 ZF 671 692

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG010485.1 Alligator sinensis Alligator_sinensis_CCG010485.1 I 0.827
ENSAMEG00000001482 Ailuropoda melanoleuca ENSAMEG00000001482 I 0.823
ENSAMXG00000004952 Astyanax mexicanus ENSAMXG00000004952 I 0.789
PRDM1 Canis familiaris ENSCAFG00000003694 I 0.823
PRDM1 Callithrix jacchus ENSCJAG00000006332 I 0.820
PRDM1 Cavia porcellus ENSCPOG00000014064 I 0.812
ENSCSAG00000014744 Chlorocebus sabaeus ENSCSAG00000014744 I 0.820
PRDM1 Equus caballus ENSECAG00000009044 I 0.823
PRDM1 Erinaceus europaeus ENSEEUG00000013222 I 0.825
PRDM1 Echinops telfairi ENSETEG00000019669 I 0.812
PRDM1 Felis catus ENSFCAG00000010755 I 0.823
PRDM1 Homo sapiens ENSG00000057657 D 0.820
PRDM1 Gorilla gorilla ENSGGOG00000001929 I 0.820
PRDM1 Loxodonta africana ENSLAFG00000013436 I 0.820
ENSMEUG00000000043 Macropus eugenii ENSMEUG00000000043 I 0.819
PRDM1 Microcebus murinus ENSMICG00000010329 I 0.820
PRDM1 Myotis lucifugus ENSMLUG00000014085 I 0.823
PRDM1 Macaca mulatta ENSMMUG00000021401 I 0.820
PRDM1 Monodelphis domestica ENSMODG00000018029 I 0.811
ENSMPUG00000009522 Mustela putorius furo ENSMPUG00000009522 I 0.823
Prdm1 Mus musculus ENSMUSG00000038151 D 0.820
ENSNLEG00000013211 Nomascus leucogenys ENSNLEG00000013211 I 0.820
PRDM1 Ornithorhynchus anatinus ENSOANG00000004176 I 0.823
PRDM1 Oryctolagus cuniculus ENSOCUG00000015495 I 0.812
PRDM1 Otolemur garnettii ENSOGAG00000014036 I 0.820
PRDM1 Ochotona princeps ENSOPRG00000006055 I 0.820
ENSP00000358092 Macaca fascicularis ENSP00000358092 I 0.820
ENSPANG00000016727 Papio anubis ENSPANG00000016727 I 0.820
ENSPPYG00000016879 Pongo abelii ENSPPYG00000016879 I 0.820
ENSPSIG00000002661 Pelodiscus sinensis ENSPSIG00000002661 I 0.827
PRDM1 Pan troglodytes ENSPTRG00000018457 I 0.820
PRDM1 Pteropus vampyrus ENSPVAG00000011732 I 0.823
Prdm1 Rattus norvegicus ENSRNOG00000000323 I 0.820
PRDM1 Sorex araneus ENSSARG00000004079 I 0.825
ENSSHAG00000010080 Sarcophilus harrisii ENSSHAG00000010080 I 0.819
PRDM1 Sus scrofa ENSSSCG00000004369 I 0.823
ENSSTOG00000016505 Ictidomys tridecemlineatus ENSSTOG00000016505 I 0.820
PRDM1 Tupaia belangeri ENSTBEG00000004089 I 0.820
ENSTNIG00000012300 Tetraodon nigroviridis ENSTNIG00000012300 I 0.770
ENSTSYG00000011666 Tarsius syrichta ENSTSYG00000011666 I 0.820
PRDM1 Tursiops truncatus ENSTTRG00000012894 I 0.823
Myotis_brandtii_PRDM1_10034696 Myotis brandtii Myotis_brandtii_PRDM1_10034696 I 0.823