LIN28A (Choloepus hoffmanni)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCHOG00000002073 T164460_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.800 0.800
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000001832 CSD 36 78

Links

Other CSD family TFs
Other Choloepus hoffmanni TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002277 Calypte anna Aan_R002277 I 0.700
Aan_R005866 Calypte anna Aan_R005866 I 0.900
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.900
Cmyd_10006225 Chelonia mydas Cmyd_10006225 I 0.800
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.867
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.800
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 1.000
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.800
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.800
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.767
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.867
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 1.000
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.933
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 1.000
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.800
LIN28B Canis familiaris ENSCAFG00000003598 I 0.800
LIN28A Canis familiaris ENSCAFG00000012488 I 1.000
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.800
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.800
LIN28A Callithrix jacchus ENSCJAG00000009796 I 1.000
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.900
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.833
ENSCPOG00000019646 Cavia porcellus ENSCPOG00000019646 N 1.000
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 1.000
LIN28A Danio rerio ENSDARG00000004328 I 0.800
lin28a Danio rerio ENSDARG00000016999 I 0.867
lin28b Danio rerio ENSDARG00000052511 I 0.767
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 1.000
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.800
LIN28A Equus caballus ENSECAG00000020267 I 1.000
LIN28B Equus caballus ENSECAG00000020994 I 0.800
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.833
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.700
LIN28B Echinops telfairi ENSETEG00000015340 I 0.800
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.900
LIN28B Felis catus ENSFCAG00000005058 I 0.800
LIN28A Felis catus ENSFCAG00000012810 I 1.000
LIN28A Homo sapiens ENSG00000131914 I 1.000
LIN28B Homo sapiens ENSG00000187772 D 0.800
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.767
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.900
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.900
LIN28B Gallus gallus ENSGALG00000026761 I 0.833
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.800
LIN28A Gorilla gorilla ENSGGOG00000024918 I 1.000
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.800
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.733
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.833
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.867
LIN28A Loxodonta africana ENSLAFG00000017525 I 1.000
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.800
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.867
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 1.000
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.900
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.800
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 1.000
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.800
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.800
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.800
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.800
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 1.000
Lin28a Mus musculus ENSMUSG00000050966 I 1.000
Lin28b Mus musculus ENSMUSG00000063804 I 0.700
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 1.000
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.800
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.800
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 1.000
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.800
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 1.000
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 1.000
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 1.000
LIN28A Otolemur garnettii ENSOGAG00000003971 I 1.000
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.800
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.833
LIN28A Ochotona princeps ENSOPRG00000001591 I 1.000
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.800
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 1.000
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.800
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 1.000
LIN28A Procavia capensis ENSPCAG00000013674 N 0.967
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.867
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.767
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 1.000
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.800
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.800
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.967
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.800
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.800
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 1.000
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.700
Lin28a Rattus norvegicus ENSRNOG00000060320 I 1.000
LIN28B Sorex araneus ENSSARG00000008374 I 0.800
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.774
LIN28A Sus scrofa ENSSSCG00000003557 I 1.000
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.800
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.800
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 1.000
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.700
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.767
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.733
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.800
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 1.000
LIN28A Tursiops truncatus ENSTTRG00000005678 I 1.000
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.800
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 1.000
LIN28B Vicugna pacos ENSVPAG00000011202 N 0.800
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.800
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.833
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 1.000
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.800
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.833
lin28a.S Xenopus laevis XB-GENE-866059 I 0.767
yakG040859 Bos grunniens yakG040859 I 0.967