CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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DAPPUDRAFT_346987
(
Daphnia pulex
)
CxxC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02008 (zf-CXXC)
IPR002857
DAPPUDRAFT_346987
T167777_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DAPPUDRAFT_346987
M01908_2.00
Daphnia pulex
NNHDCGK
MCGHDNN
PBM
Weirauch et al.(2014)
pTH9345
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.700
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01908_2.00
CxxC
51
97
TSAPRRTRCGICEACQQTDCGKCNFCRDMVKFGGSGRSKQSCVLRKC
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFX80183
CxxC
422
468
TSAPRRTRCGICEACQQTDCGKCNFCRDMVKFGGSGRSKQSCVLRKC
Links
Other
CxxC
family TFs
Other
Daphnia pulex
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27613.m000642
Ricinus communis
27613.m000642
N
cassava10826.m1
Manihot esculenta
cassava10826.m1
N
cassava34699.m1
Manihot esculenta
cassava34699.m1
N
Ca_09696
Cicer arietinum
Ca_09696
N
Ca_13855
Cicer arietinum
Ca_13855
N
chr6.LjT11E14.20.nc
Lotus japonicus
chr6.LjT11E14.20.nc
N
Ciclev10007927m.g
Citrus clementina
Ciclev10007927m.g
N
Cucsa.120390
Cucumis sativus
Cucsa.120390
N
Eucgr.A01051
Eucalyptus grandis
Eucgr.A01051
N
evm.TU.supercontig_12.194
Carica papaya
evm.TU.supercontig_12.194
N
gene03551-v1.0-hybrid
Fragaria vesca
gene03551-v1.0-hybrid
N
gene21592-v1.0-hybrid
Fragaria vesca
gene21592-v1.0-hybrid
N
GLYMA02G46730
Glycine max
GLYMA02G46730
N
GLYMA14G01960
Glycine max
GLYMA14G01960
N
GLYMA18G09030
Glycine max
GLYMA18G09030
N
Gorai.007G167000
Gossypium raimondii
Gorai.007G167000
N
Gorai.009G446100
Gossypium raimondii
Gorai.009G446100
N
MDP0000205236
Malus domestica
MDP0000205236
N
MDP0000284679
Malus domestica
MDP0000284679
N
MTR_3g056110
Medicago truncatula
MTR_3g056110
N
MTR_5g094450
Medicago truncatula
MTR_5g094450
N
Pm012019
Prunus mume
Pm012019
N
SCL5
Populus trichocarpa
POPTR_0001s37270
N
Solyc07g065270.1
Solanum lycopersicum
Solyc07g065270.1
N
TCM_030733
Theobroma cacao
TCM_030733
N
VIT_12s0057g00560
Vitis vinifera
VIT_12s0057g00560
N
SCL5
Vitis vinifera
VIT_19s0090g01740
N