CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

foxf2a *(Tetraodon nigroviridis)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	ENSTNIG00000008527	T187189_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXF2 M02680_2.00	Homo sapiens	BNHNSRTAAACAHN	NDTGTTTAYSNDNV	SELEX Mathelier et al.(2014) MA0030.1	0.836	0.965
FOXF2 M10548_2.00	Homo sapiens	BNHNBRTAAACAHNVN	NBNDTGTTTAYVNDNV	Transfac Matys et al.(2006) V$FREAC2_01	0.836	0.965
FOXF1 M10529_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL5_Q3	0.820	0.953
FOXF1 M10530_2.00	Homo sapiens	YRHATAAACAHNB	VNDTGTTTATDYR	Transfac Matys et al.(2006) V$HFH8_01	0.820	0.953
FOXE1 M04845_2.00	Homo sapiens	BVYTAWRYAAACADN	NHTGTTTRYWTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_HT-SELEX	0.760	0.616
FOXE1 M04846_2.00	Homo sapiens	BVYTAARYAAACAWH	DWTGTTTRYTTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_Methyl-HT-SELEX	0.760	0.616
FOXD2 M03042_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD2_1	0.753	0.640
FOXD2 M03043_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD2_2	0.753	0.640
FOXD2 M04851_2.00	Homo sapiens	HWASAATAAYAWWN	NWWTRTTATTSTWD	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_1	0.753	0.640
FOXD2 M04852_2.00	Homo sapiens	VYWANRTAAAYAH	DTRTTTAYNTWRB	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_2	0.753	0.640
FOXD1 M02681_2.00	Homo sapiens	GTAAACAD	HTGTTTAC	SELEX Mathelier et al.(2014) MA0031.1	0.753	0.640
Foxd1 M10570_2.00	Mus musculus	SYWAWGTAAACADHVN	NBDHTGTTTACWTWRS	Transfac Matys et al.(2006) V$FREAC4_01	0.753	0.640
FOXD1 M10567_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FREAC4_02	0.753	0.640
FOXD2 M04853_2.00	Homo sapiens	HWACAATAACRWWN	NWWYGTTATTGTWD	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_1	0.753	0.640
FOXD2 M04854_2.00	Homo sapiens	RYTRNGTMAACRD	HYGTTKACNYARY	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_2	0.753	0.640
Gm5294 M01984_2.00	Mus musculus	NNKRTAAACANN	NNTGTTTAYMNN	PBM Weirauch et al.(2014) pTH3802	0.750	0.535
FOXD4L4 M10564_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXD4L4_01	0.749	0.605
FOXD3 M03044_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD3_1	0.746	0.628
FOXD3 M03045_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD3_2	0.746	0.628
FOXD3 M04855_2.00	Homo sapiens	VHWRHRTAMACW	WGTKTAYDYWDB	SELEX Yin et al.(2017) FOXD3_eDBD_HT-SELEX	0.746	0.628
Foxd3 M09114_2.00	Mus musculus	DVNWRDRNAAACAVN	NBTGTTTNYHYWNBH	Misc Kulakovskiy et al.(2013) FOXD3_MOUSE.H11MO.0.C	0.746	0.628
FOXD3 M10565_2.00	Homo sapiens	RADHAAAYAWWH	DWWTRTTTDHTY	Transfac Matys et al.(2006) V$FOXD3_01	0.746	0.628
FOXD3 M10566_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HFH2_Q5	0.746	0.628
FOXD3 M04856_2.00	Homo sapiens	VYWRHRTAAACW	WGTTTAYDYWRB	SELEX Yin et al.(2017) FOXD3_eDBD_Methyl-HT-SELEX	0.746	0.628
foxe3 M01228_2.00	Xenopus tropicalis	WNNVHHMAYW	WRTKDDBNNW	PBM Lambert et al.(2019) pTH9824	0.746	0.605
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.740	0.593
Foxl1 M00164_2.00	Mus musculus	NNNRTMAAYA	TRTTKAYNNN	PBM Badis et al.(2009) Foxl1_2809	0.739	0.651
FOXL1 M03034_2.00	Homo sapiens	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) FOXL1_1	0.739	0.640
FOXL1 M03035_2.00	Homo sapiens	NRTAAAYAAAYAN	NTRTTTRTTTAYN	SELEX Jolma et al.(2013) FOXL1_2	0.739	0.640
FOXL1 M10558_2.00	Homo sapiens	DHNVHATAAAYAHNNN	NNNDTRTTTATDBNDH	Transfac Matys et al.(2006) V$FREAC7_01	0.739	0.640
bin M03752_2.00	Drosophila melanogaster	HTAATGTAAACAAW	WTTGTTTACATTAD	SELEX Nitta et al.(2015) bin_1	0.732	0.674
bin M06199_2.00	Drosophila melanogaster	TAAACARVGA	TCBYTGTTTA	B1H Zhu et al.(2011) bin_FlyReg_FBgn0045759	0.732	0.674
bin M06200_2.00	Drosophila melanogaster	RTAAACA	TGTTTAY	B1H Zhu et al.(2011) bin_SANGER_5_FBgn0045759	0.732	0.674
fd59A M03739_2.00	Drosophila melanogaster	HWAWRTAAACAWW	WWTGTTTAYWTWD	SELEX Nitta et al.(2015) fd59A_1	0.730	0.605
fd59A M03740_2.00	Drosophila melanogaster	WWAVAATAACAHN	NDTGTTATTBTWW	SELEX Nitta et al.(2015) fd59A_2	0.730	0.605
fd59A M03741_2.00	Drosophila melanogaster	YWRWRTAAAYAHH	DDTRTTTAYWYWR	SELEX Nitta et al.(2015) fd59A_3	0.730	0.605
fd59A M03742_2.00	Drosophila melanogaster	MWACAAYAAYAHW	WDTRTTRTTGTWK	SELEX Nitta et al.(2015) fd59A_4	0.730	0.605
let-381 M00664_2.00	Caenorhabditis elegans	RTAAACAW	WTGTTTAY	PBM Narasimhan et al.(2015) pTH9057	0.719	0.674
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.699	0.651
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.699	0.651
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.699	0.651
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.699	0.651
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.699	0.651
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.699	0.651
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.699	0.651
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.699	0.651
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.699	0.651
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.699	0.651
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.699	0.651
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.699	0.651
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.699	0.651
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.699	0.651
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.699	0.651
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.699	0.651
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.699	0.651
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.699	0.651
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.699	0.651
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.699	0.651
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.699	0.640
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.699	0.640
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.699	0.640
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.699	0.640
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.699	0.640
FOXL2 M04847_2.00	Homo sapiens	NVBGHMAACAH	DTGTTKDCVBN	SELEX Yin et al.(2017) FOXL2_FL_HT-SELEX	0.683	0.628
Foxl2 M09112_2.00	Mus musculus	DWDWRTAAACA	TGTTTAYWHWH	Misc Kulakovskiy et al.(2013) FOXL2_MOUSE.H11MO.0.C	0.683	0.628
FOXL2 M10560_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q2	0.683	0.628
FOXL2 M10561_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q5	0.683	0.628
FOXL2 M04848_2.00	Homo sapiens	HVCGWMAACAH	DTGTTKWCGBD	SELEX Yin et al.(2017) FOXL2_FL_Methyl-HT-SELEX	0.683	0.628
FOXC1 M00254_2.00	Homo sapiens	RRTAAACANN	NNTGTTTAYY	PBM Barrera et al.(2016) FOXC1_I126M	0.683	0.651
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.671	0.593
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.671	0.593
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.671	0.593
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.671	0.593
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.671	0.593
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.671	0.593
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.671	0.593
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.671	0.593
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.671	0.581
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSTNIP00000011367	Forkhead	56	145	KPPYSYIALIVMAIQSSPSKRLTLSEIYHFLQARFPFFRGSYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPSSEFMFEEGSF

Links
Other Forkhead family TFs
Other *Tetraodon nigroviridis* TFs

1144 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
29929.m004704	Ricinus communis	29929.m004704	D
AMTR_s00005p00185670	Amborella trichopoda	AMTR_s00005p00185670	I
AMTR_s00055p00209070	Amborella trichopoda	AMTR_s00055p00209070	I
Aquca_011_00297	Aquilegia coerulea	Aquca_011_00297	I
Aquca_123_00031	Aquilegia coerulea	Aquca_123_00031	I
GT-1	Arabidopsis thaliana	AT1G13450	D
GT-4	Arabidopsis thaliana	AT3G25990	D
Bo2g138840	Brassica oleracea	Bo2g138840	I
Bo5g017510	Brassica oleracea	Bo5g017510	I
Bo8g107400	Brassica oleracea	Bo8g107400	I
Bostr.0556s0275	Boechera stricta	Bostr.0556s0275	I
Bostr.13671s0104	Boechera stricta	Bostr.13671s0104	I
Bra019721	Brassica rapa	Bra019721	I
Bra026903	Brassica rapa	Bra026903	I
Bra036354	Brassica rapa	Bra036354	I
Cagra.3501s0157	Capsella grandiflora	Cagra.3501s0157	I
Cagra.6197s0012	Capsella grandiflora	Cagra.6197s0012	I
Carubv10009313m.g	Capsella rubella	Carubv10009313m.g	I
Carubv10017413m.g	Capsella rubella	Carubv10017413m.g	I
cassava11841.valid.m1	Manihot esculenta	cassava11841.valid.m1	I
cassava13991.valid.m1	Manihot esculenta	cassava13991.valid.m1	D
Ca_11315	Cicer arietinum	Ca_11315	I
Ciclev10031750m.g	Citrus clementina	Ciclev10031750m.g	I
Cla023054	Citrullus lanatus	Cla023054	I
Cucsa.394820	Cucumis sativus	Cucsa.394820	I
Eucgr.B03456	Eucalyptus grandis	Eucgr.B03456	I
Eucgr.J02286	Eucalyptus grandis	Eucgr.J02286	I
evm.TU.supercontig_130.35	Carica papaya	evm.TU.supercontig_130.35	I
evm.TU.supercontig_1453.1	Carica papaya	evm.TU.supercontig_1453.1	I
fgenesh2_kg.5__353__AT3G25990.1	Arabidopsis lyrata	fgenesh2_kg.5__353__AT3G25990.1	D
GLYMA11G37390	Glycine max	GLYMA11G37390	D
GLYMA18G01360	Glycine max	GLYMA18G01360	I
Gorai.008G163200	Gossypium raimondii	Gorai.008G163200	I
Gorai.009G333800	Gossypium raimondii	Gorai.009G333800	I
GRMZM2G047370	Zea mays	GRMZM2G047370	I
GSMUA_Achr5G17240_001	Musa acuminata	GSMUA_Achr5G17240_001	I
LjT04G17.70.nc	Lotus japonicus	LjT04G17.70.nc	I
Lus10015824.g	Linum usitatissimum	Lus10015824.g	I
Lus10036978.g	Linum usitatissimum	Lus10036978.g	I
MDP0000164819	Malus domestica	MDP0000164819	D
MDP0000275412	Malus domestica	MDP0000275412	I
mgf016368m	Mimulus guttatus	mgf016368m	I
MLOC_64014	Hordeum vulgare	MLOC_64014	I
MTR_3g085960	Medicago truncatula	MTR_3g085960	D
OB04G23970	Oryza brachyantha	OB04G23970	I
orange1.1g015940m.g	Citrus sinensis	orange1.1g015940m.g	I
OS04G0486400	Oryza sativa	OS04G0486400	D
Pavir.Ga01561	Panicum virgatum	Pavir.Ga01561	I
PDK_20s1345831g002	Phoenix dactylifera	PDK_20s1345831g002	I
PK20543.1	Cannabis sativa	PK20543.1	D
Pm006885	Prunus mume	Pm006885	I
Pm016214	Prunus mume	Pm016214	I
POPTR_0008s17980	Populus trichocarpa	POPTR_0008s17980	I
POPTR_0010s06510	Populus trichocarpa	POPTR_0010s06510	I
PRUPE_ppa005942mg	Prunus persica	PRUPE_ppa005942mg	I
PRUPE_ppa009404mg	Prunus persica	PRUPE_ppa009404mg	I
SapurV1A.0206s0170	Salix purpurea	SapurV1A.0206s0170	I
SapurV1A.1719s0020	Salix purpurea	SapurV1A.1719s0020	I
GT-1	Arabidopsis lyrata	scaffold_101505.1	D
Si010147m.g	Setaria italica	Si010147m.g	I
Si036121m.g	Setaria italica	Si036121m.g	I
Solyc12g077540.1	Solanum lycopersicum	Solyc12g077540.1	I
TCM_010751	Theobroma cacao	TCM_010751	I
Thhalv10004359m.g	Eutrema salsugineum	Thhalv10004359m.g	I
Thhalv10007959m.g	Eutrema salsugineum	Thhalv10007959m.g	I
VIT_01s0010g02420	Vitis vinifera	VIT_01s0010g02420	I
VIT_14s0171g00450	Vitis vinifera	VIT_14s0171g00450	I
VIT_17s0000g10420	Vitis vinifera	VIT_17s0000g10420	D

foxf2a (Tetraodon nigroviridis) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1144 Related TFs

foxf2a **(Tetraodon nigroviridis)
Forkhead**