Cla014774 (Citrullus lanatus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cla014774 T195878_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.853 0.972
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.847 0.833
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.844 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.844 0.806
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.839 0.917
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.839 0.917
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.833 0.778
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.833 0.778
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.833 0.778
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.833 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.832 0.750
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.832 0.750
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.832 0.750
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.778
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.819 0.778
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.819 0.778
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.819 0.778
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla014774 GATA 212 247

Links

Other GATA family TFs
Other Citrullus lanatus TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
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Bo7g097160 Brassica oleracea Bo7g097160 N
Bo9g013770 Brassica oleracea Bo9g013770 N
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N
Bra009735 Brassica rapa Bra009735 N
Bra026466 Brassica rapa Bra026466 N
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N
Carubv10000608m.g Capsella rubella Carubv10000608m.g N
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N
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Ca_03953 Cicer arietinum Ca_03953 N
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N
Cla004302 Citrullus lanatus Cla004302 N
Cucsa.012950 Cucumis sativus Cucsa.012950 N
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N
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GLYMA04G41691 Glycine max GLYMA04G41691 N
GLYMA06G13100 Glycine max GLYMA06G13100 N
GLYMA13G08390 Glycine max GLYMA13G08390 N
GLYMA14G31370 Glycine max GLYMA14G31370 N
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N
LPERR05G23180 Leersia perrieri LPERR05G23180 N
Lus10014934.g Linum usitatissimum Lus10014934.g N
MDP0000831937 Malus domestica MDP0000831937 N
mgf001401m Mimulus guttatus mgf001401m N
mgf006107m Mimulus guttatus mgf006107m N
MTR_3g090900 Medicago truncatula MTR_3g090900 N
OB05G35020 Oryza brachyantha OB05G35020 N
OBART05G27520 Oryza barthii OBART05G27520 N
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N
OLONG_028119 Oryza longistaminata OLONG_028119 N
OMERI05G23510 Oryza meridionalis OMERI05G23510 N
ONIVA05G29570 Oryza nivara ONIVA05G29570 N
OPUNC05G25110 Oryza punctata OPUNC05G25110 N
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N
Pavir.J13718 Panicum virgatum Pavir.J13718 N
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N
PK06897.1 Cannabis sativa PK06897.1 N
Pm019782 Prunus mume Pm019782 N
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N
POPTR_0015s02320 Populus trichocarpa POPTR_0015s02320 N
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N
Si021904m.g Setaria italica Si021904m.g N
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N
TCM_015349 Theobroma cacao TCM_015349 N
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SIGE Vitis vinifera VIT_16s0050g02520 N