PBX2 (Tursiops truncatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTTRG00000013787 T217026_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 1.000
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 1.000
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 1.000
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.982
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 0.965
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 0.965
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 0.965
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 0.965
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 0.965
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 0.965
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 0.965
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 0.965
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 0.965
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 0.965
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 0.965
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 0.965
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 0.965
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 0.965
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.965
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.912
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.912
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.895
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000013078 Homeodomain 219 278

Links

Other Homeodomain family TFs
Other Tursiops truncatus TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29742.m001400 Ricinus communis 29742.m001400 I
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I
ERF023 Arabidopsis thaliana AT1G01250 D
Bo5g002600 Brassica oleracea Bo5g002600 I
Bo8g117810 Brassica oleracea Bo8g117810 I
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I
Bra032630 Brassica rapa Bra032630 I
Bra033274 Brassica rapa Bra033274 I
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I
Carubv10010347m.g Capsella rubella Carubv10010347m.g I
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I
Ca_01325 Cicer arietinum Ca_01325 I
Ca_17638 Cicer arietinum Ca_17638 I
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I
GLYMA03G41910 Glycine max GLYMA03G41910 I
GLYMA16G02680 Glycine max GLYMA16G02680 I
GLYMA19G44580 Glycine max GLYMA19G44580 I
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I
mgf020568m Mimulus guttatus mgf020568m I
MTR_7g117690 Medicago truncatula MTR_7g117690 I
MTR_8g027465 Medicago truncatula MTR_8g027465 I
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I
PK15554.1 Cannabis sativa PK15554.1 I
Pm018354 Prunus mume Pm018354 I
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I
TCM_005130 Theobroma cacao TCM_005130 I
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I