chr1.LjT43L07.200.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr1.LjT43L07.200.nd T010157_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.811 0.940
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.811 0.940
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.683 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjT43L07.200.nd AP2 26 77

Links

Other AP2 family TFs
Other Lotus japonicus TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.837
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.837
PK15554.1 Cannabis sativa PK15554.1 I 0.837
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.833
Pm018354 Prunus mume Pm018354 I 0.833
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.829
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.829
29742.m001400 Ricinus communis 29742.m001400 I 0.829
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.827
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.827
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.827
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.825
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.825
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.825
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.825
TCM_005130 Theobroma cacao TCM_005130 I 0.824
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.824
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.818
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.813
ERF023 Arabidopsis thaliana AT1G01250 D 0.811
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.811
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.811
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.811
Ca_17638 Cicer arietinum Ca_17638 I 0.809
mgf020568m Mimulus guttatus mgf020568m I 0.808
Bra032630 Brassica rapa Bra032630 I 0.807
Ca_01325 Cicer arietinum Ca_01325 I 0.807
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.805
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.805
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.803
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.801
Bo5g002600 Brassica oleracea Bo5g002600 I 0.798
Bra033274 Brassica rapa Bra033274 I 0.798
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.798
Gorai.007G109400 Gossypium raimondii Gorai.007G109400 I 0.795
Bo8g117810 Brassica oleracea Bo8g117810 I 0.794
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.785
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.758
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.686
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.685
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.683
Cla012665 Citrullus lanatus Cla012665 I 0.682
cassava32974.m1 Manihot esculenta cassava32974.m1 I 0.682
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.682
PGSC0003DMG400007036 Solanum tuberosum PGSC0003DMG400007036 N 0.681