TCM_042098 (Theobroma cacao)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TCM_042098 T223947_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.822 0.660
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.553
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.426
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.426
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.426
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.426
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY34417 Homeodomain 642 691

Links

Other Homeodomain family TFs
Other Theobroma cacao TFs

1011 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1Q1_02593 Trichosporon asahii A1Q1_02593 N
AACERI_AaceriAGL345W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGL345W N
AGOS_AGL345W Ashbya gossypii AGOS_AGL345W N
AWRI1499_2837 Brettanomyces bruxellensis AWRI1499_2837 N
BGIBMGA006156 Bombyx mori BGIBMGA006156 N
BN7_5943 Wickerhamomyces ciferrii BN7_5943 N
CC1G_07855 Coprinopsis cinerea CC1G_07855 N
CMQ_7998 Grosmannia clavigera CMQ_7998 N
estExt_Genewise1.C_120062 Heterobasidion annosum estExt_Genewise1.C_120062 N
F503_05434 Ophiostoma piceae uamh F503_05434 N
fgenesh1_pg.C_scaffold_11000089 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000089 N
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N
GLOINDRAFT_9339 Rhizophagus irregularis GLOINDRAFT_9339 N
GPLIN_000170600 Globodera pallida GPLIN_000170600 N
HETIRDRAFT_460226 Heterobasidion irregulare HETIRDRAFT_460226 N
HPODL_02662 Ogataea parapolymorpha HPODL_02662 N
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N
K437DRAFT_266676 Tilletiaria anomala K437DRAFT_266676 N
K437DRAFT_66818 Tilletiaria anomala K437DRAFT_66818 N
KUCA_T00004799001 Kuraishia capsulata KUCA_T00004799001 N
LALA0_S01e08702g Lachancea lanzarotensis LALA0_S01e08702g N
LALA0_S10e00254g Lachancea lanzarotensis LALA0_S10e00254g N
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N
MAC_03708 Metarhizium acridum MAC_03708 N
MAJ_01270 Metarhizium majus MAJ_01270 N
MBR_01289 Metarhizium brunneum MBR_01289 N
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N
Moror_8439 Moniliophthora roreri Moror_8439 N
MPER_12197 Moniliophthora perniciosa MPER_12197 N
MVLG_01553 Microbotryum violaceum MVLG_01553 N
NCLIV_023590 Neospora caninum NCLIV_023590 N
PAS_chr3_1149 Komagataella pastoris PAS_chr3_1149 N
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N
SAKL0H00726g Lachancea kluyveri SAKL0H00726g N
SPBR_07296 Sporothrix brasiliensis SPBR_07296 N
sr12520 Sporisorium reilianum sr12520 N
TSTA_110260 Talaromyces stipitatus TSTA_110260 N
UM01457 Ustilago maydis UM01457 N
X797_001779 Metarhizium robertsii X797_001779 N
XP_002492281.1 Pichia pastoris XP_002492281.1 N