Lus10013979.g (Linum usitatissimum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Lus10013979.g T228865_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.844 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10013979 Homeodomain 47 103

Links

Other Homeodomain family TFs
Other Linum usitatissimum TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0001009801 Angiostrongylus costaricensis ACOC_0001009801 I 0.000
ALUE_0000559201 Ascaris lumbricoides ALUE_0000559201 I 0.000
ASU_05583 Ascaris suum ASU_05583 I 0.000
Bm5392 Brugia malayi Bm5392 I 0.000
BTMF_0000986201 Brugia timori BTMF_0000986201 I 0.000
CRE28480 Caenorhabditis remanei CRE28480 I 0.000
GPLIN_001276900 Globodera pallida GPLIN_001276900 I 0.000
L596_g21623 Steinernema carpocapsae L596_g21623 I 0.000
L889_g26642 Steinernema feltiae L889_g26642 I 0.000
L892_g28207 Steinernema scapterisci L892_g28207 I 0.000
L893_g8649 Steinernema glaseri L893_g8649 I 0.000
MhA1_Contig353.frz3.fgene4 Meloidogyne hapla MhA1_Contig353.frz3.fgene4 I 0.000
nAv.1.0.1.g02965 Acanthocheilonema viteae nAv.1.0.1.g02965 I 0.000
nDi.2.2.2.g01961 Dirofilaria immitis nDi.2.2.2.g01961 I 0.000
nLs.2.1.2.g00563 Litomosoides sigmodontis nLs.2.1.2.g00563 I 0.000
nOo.2.0.1.g05753 Onchocerca ochengi nOo.2.0.1.g05753 I 0.000
nOo.2.0.1.g07140 Onchocerca ochengi nOo.2.0.1.g07140 I 0.000
OFLC_0000193701 Onchocerca flexuosa OFLC_0000193701 I 0.000
PTRK_0000872800 Parastrongyloides trichosuri PTRK_0000872800 I 0.000
RSKR_0000006600 Rhabditophanes kr3021 RSKR_0000006600 I 0.000
SMUV_0000148401 Syphacia muris SMUV_0000148401 I 0.000
snap_masked-nMf.1.1.scaf25582-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf25582-processed-gene-0.1 I 0.000
SPAL_0000140300 Strongyloides papillosus SPAL_0000140300 I 0.000
SVE_0221800 Strongyloides venezuelensis SVE_0221800 I 0.000
TCLT_0000249001 Thelazia callipaeda TCLT_0000249001 I 0.000
TCNE_0000984601 Toxocara canis TCNE_0000984601 I 0.000
daf-16 Caenorhabditis elegans WBGene00000912 D 0.000
WBGene00237302 Onchocerca volvulus WBGene00237302 I 0.000
WUBG_10392 Wuchereria bancrofti WUBG_10392 I 0.000