csin101619 (Clonorchis sinensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 csin101619 T233347_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.930
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.930
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.930
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.930
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.930
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.912
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.912
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.912
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.912
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.912
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
csin101619 Homeodomain 344 400

Links

Other Homeodomain family TFs
Other Clonorchis sinensis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R014069 Calypte anna Aan_R014069 I
Afo_R003945 Aptenodytes forsteri Afo_R003945 I
B7ZRM8 Xenopus laevis B7ZRM8 I
B7ZRU9 Xenopus laevis B7ZRU9 I
Brh_R009954 Buceros rhinoceros Brh_R009954 I
Cmyd_10009299 Chelonia mydas Cmyd_10009299 I
MECOM Anolis carolinensis ENSACAG00000015620 I
ENSAMEG00000002052 Ailuropoda melanoleuca ENSAMEG00000002052 I
ENSAPLG00000012134 Anas platyrhynchos ENSAPLG00000012134 I
MECOM Bos taurus ENSBTAG00000005871 I
MECOM Canis familiaris ENSCAFG00000014621 I
MECOM Callithrix jacchus ENSCJAG00000002651 I
MECOM Cavia porcellus ENSCPOG00000013572 I
ENSCSAG00000012539 Chlorocebus sabaeus ENSCSAG00000012539 I
MECOM Dasypus novemcinctus ENSDNOG00000007746 I
MECOM Equus caballus ENSECAG00000020788 I
ENSFALG00000008636 Ficedula albicollis ENSFALG00000008636 I
MECOM Felis catus ENSFCAG00000012665 I
MECOM Homo sapiens ENSG00000085276 D
ENSGALG00000009437 Gallus gallus ENSGALG00000009437 I
MECOM Gorilla gorilla ENSGGOG00000013086 I
ENSLACG00000017233 Latimeria chalumnae ENSLACG00000017233 I
MECOM Loxodonta africana ENSLAFG00000011479 I
ENSLOCG00000009557 Lepisosteus oculatus ENSLOCG00000009557 I
MECOM Meleagris gallopavo ENSMGAG00000010302 I
MECOM Myotis lucifugus ENSMLUG00000015749 I
MECOM Macaca mulatta ENSMMUG00000002242 I
ENSMMUP00000002995 Macaca fascicularis ENSMMUP00000002995 I
MECOM Monodelphis domestica ENSMODG00000016133 I
ENSMPUG00000017083 Mustela putorius furo ENSMPUG00000017083 I
Mecom Mus musculus ENSMUSG00000027684 D
ENSNLEG00000004964 Nomascus leucogenys ENSNLEG00000004964 I
MECOM Ornithorhynchus anatinus ENSOANG00000007585 I
ENSOARG00000000899 Ovis aries ENSOARG00000000899 I
MECOM Oryctolagus cuniculus ENSOCUG00000010171 I
MECOM Otolemur garnettii ENSOGAG00000012812 I
ENSP00000417899-D1 Bos grunniens ENSP00000417899-D1 I
ENSPANG00000001637 Papio anubis ENSPANG00000001637 I
MECOM Procavia capensis ENSPCAG00000000947 N
ENSPFOG00000011975 Poecilia formosa ENSPFOG00000011975 I
ENSPPYG00000014277 Pongo abelii ENSPPYG00000014277 I
ENSPSIG00000004908 Pelodiscus sinensis ENSPSIG00000004908 I
MECOM Pan troglodytes ENSPTRG00000015601 I
Mecom Rattus norvegicus ENSRNOG00000012645 I
ENSSHAG00000017530 Sarcophilus harrisii ENSSHAG00000017530 I
MECOM Sus scrofa ENSSSCG00000011743 N
ENSSTOG00000013385 Ictidomys tridecemlineatus ENSSTOG00000013385 N
ENSTGUG00000011015 Taeniopygia guttata ENSTGUG00000011015 I
MECOM Tursiops truncatus ENSTTRG00000002158 I
ENSXMAG00000010745 Xiphophorus maculatus ENSXMAG00000010745 I
Gfo_R004540 Geospiza fortis Gfo_R004540 I
Myotis_brandtii_MECOM_10024770 Myotis brandtii Myotis_brandtii_MECOM_10024770 I
Pvit_19180 Pogona vitticeps Pvit_19180 I
Tal_R005471 Tyto alba Tal_R005471 I
mecom.S Xenopus laevis XB-GENE-6448217 I
mecom.L Xenopus laevis XB-GENE-980198 I