SPER_0000704701 (Spirometra erinaceieuropaei)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SPER_0000704701 T236328_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.756 0.500
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.756 0.500
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.756 0.500
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.756 0.500
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.756 0.500
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.756 0.500
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.756 0.500
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.756 0.500
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.756 0.500
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.722 0.391
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.722 0.391
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.722 0.391
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPER_0000704701-mRNA-1 Homeodomain 98 143

Links

Other Homeodomain family TFs
Other Spirometra erinaceieuropaei TFs

1231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000736 Ricinus communis 29814.m000736 I
30170.m013927 Ricinus communis 30170.m013927 I
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I
BGIOSGA000003 Oryza indica BGIOSGA000003 N
cassava16103.m1 Manihot esculenta cassava16103.m1 I
cassava41257.m1 Manihot esculenta cassava41257.m1 I
Ca_01522 Cicer arietinum Ca_01522 I
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I
Cla004431 Citrullus lanatus Cla004431 I
Cla020946 Citrullus lanatus Cla020946 I
Cla021015 Citrullus lanatus Cla021015 I
Cucsa.123440 Cucumis sativus Cucsa.123440 I
Cucsa.368410 Cucumis sativus Cucsa.368410 I
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I
GLYMA04G03910 Glycine max GLYMA04G03910 I
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I
GRMZM2G369799 Zea mays GRMZM2G369799 I
LPERR01G40230 Leersia perrieri LPERR01G40230 I
Lus10007503.g Linum usitatissimum Lus10007503.g I
Lus10010055.g Linum usitatissimum Lus10010055.g I
Lus10010238.g Linum usitatissimum Lus10010238.g I
Lus10028979.g Linum usitatissimum Lus10028979.g I
Lus10040940.g Linum usitatissimum Lus10040940.g I
MDP0000298689 Malus domestica MDP0000298689 I
mgf020432m Mimulus guttatus mgf020432m I
mgf023922m Mimulus guttatus mgf023922m I
OB01G55080 Oryza brachyantha OB01G55080 N
OGLUM01G50230 Oryza glumaepatula OGLUM01G50230 N
OLONG_011153 Oryza longistaminata OLONG_011153 N
ONIVA01G52120 Oryza nivara ONIVA01G52120 N
OPUNC01G44800 Oryza punctata OPUNC01G44800 N
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I
ORGLA01G0396300 Oryza glaberrima ORGLA01G0396300 N
ORUFI01G49370 Oryza rufipogon ORUFI01G49370 N
OS01G0977300 Oryza sativa OS01G0977300 N
Pavir.Ca02945 Panicum virgatum Pavir.Ca02945 I
Pavir.Cb00156 Panicum virgatum Pavir.Cb00156 I
Pavir.J33236 Panicum virgatum Pavir.J33236 I
PK01153.1 Cannabis sativa PK01153.1 I
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I
Sb0088s002210 Sorghum bicolor Sb0088s002210 N
Si022959m.g Setaria italica Si022959m.g I
TCM_007138 Theobroma cacao TCM_007138 I
TCM_042474 Theobroma cacao TCM_042474 I
Traes_4AS_A79A68739 Triticum aestivum Traes_4AS_A79A68739 N
Traes_4BL_545A5716E Triticum aestivum Traes_4BL_545A5716E I
Traes_4DL_D41CB81EA Triticum aestivum Traes_4DL_D41CB81EA I
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I