irf4a (Danio rerio)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSDARG00000006560 T244009_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.914 0.914
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.914 0.914
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.914 0.914
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.914 0.914
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.914 0.914
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.914 0.914
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.914 0.914
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.914 0.914
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.914 0.914
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.914 0.914
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.914 0.914
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.905 0.905
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.905 0.905
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.781 0.781
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.762 0.762
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.762 0.762
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.762 0.762
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.762 0.762
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.762 0.762
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.762 0.762
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.762 0.762
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.762 0.762
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.762 0.762
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000005897 IRF 17 122

Links

Other IRF family TFs
Other Danio rerio TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28179.m000457 Ricinus communis 28179.m000457 N
29596.m000688 Ricinus communis 29596.m000688 N
30131.m006993 Ricinus communis 30131.m006993 I
Aquca_010_00033 Aquilegia coerulea Aquca_010_00033 N
BHLH61 Arabidopsis thaliana AT5G10570 N
BHLH93 Arabidopsis thaliana AT5G65640 N
BGIOSGA011499 Oryza indica BGIOSGA011499 N
BGIOSGA023624 Oryza indica BGIOSGA023624 N
BGIOSGA031474 Oryza indica BGIOSGA031474 N
Bo2g168250 Brassica oleracea Bo2g168250 N
Bo3g097890 Brassica oleracea Bo3g097890 N
Bo9g171940 Brassica oleracea Bo9g171940 N
Bostr.0568s0223 Boechera stricta Bostr.0568s0223 N
Bostr.13175s0042 Boechera stricta Bostr.13175s0042 N
Bra024404 Brassica rapa Bra024404 N
Bra031852 Brassica rapa Bra031852 N
BRADI1G30000 Brachypodium distachyon BRADI1G30000 N
BRADI1G76030 Brachypodium distachyon BRADI1G76030 N
Cagra.0917s0023 Capsella grandiflora Cagra.0917s0023 N
Cagra.1085s0002 Capsella grandiflora Cagra.1085s0002 N
Carubv10001486m.g Capsella rubella Carubv10001486m.g N
Carubv10026606m.g Capsella rubella Carubv10026606m.g N
cassava1707.valid.m1 Manihot esculenta cassava1707.valid.m1 N
cassava20174.m1 Manihot esculenta cassava20174.m1 N
cassava35909.valid.m1 Manihot esculenta cassava35909.valid.m1 N
cassava42105.valid.m1 Manihot esculenta cassava42105.valid.m1 N
cassava7475.valid.m1 Manihot esculenta cassava7475.valid.m1 I
Ca_04981 Cicer arietinum Ca_04981 N
Ca_11531 Cicer arietinum Ca_11531 N
chr2.CM0177.460.nc Lotus japonicus chr2.CM0177.460.nc N
chr2.CM0504.20.nd Lotus japonicus chr2.CM0504.20.nd N
Ciclev10001683m.g Citrus clementina Ciclev10001683m.g N
Ciclev10025967m.g Citrus clementina Ciclev10025967m.g N
Cla014300 Citrullus lanatus Cla014300 N
Cla022518 Citrullus lanatus Cla022518 N
Cla023435 Citrullus lanatus Cla023435 N
Cucsa.103760 Cucumis sativus Cucsa.103760 N
Cucsa.160860 Cucumis sativus Cucsa.160860 N
Cucsa.312190 Cucumis sativus Cucsa.312190 N
Eucgr.F00459 Eucalyptus grandis Eucgr.F00459 N
Eucgr.F02171 Eucalyptus grandis Eucgr.F02171 N
Eucgr.I00608 Eucalyptus grandis Eucgr.I00608 N
evm.TU.supercontig_129.19 Carica papaya evm.TU.supercontig_129.19 N
evm.TU.supercontig_177.1 Carica papaya evm.TU.supercontig_177.1 N
F775_00539 Aegilops tauschii F775_00539 N
fgenesh2_kg.6__1024__AT5G10570.1 Arabidopsis lyrata fgenesh2_kg.6__1024__AT5G10570.1 N
bHLH093 Arabidopsis lyrata fgenesh2_kg.8__2611__AT5G65640.1 N
gene05560-v1.0-hybrid Fragaria vesca gene05560-v1.0-hybrid N
gene26895-v1.0-hybrid Fragaria vesca gene26895-v1.0-hybrid N
GLYMA01G02390 Glycine max GLYMA01G02390 N
GLYMA02G38240 Glycine max GLYMA02G38240 N
GLYMA06G09670 Glycine max GLYMA06G09670 N
GLYMA08G37240 Glycine max GLYMA08G37240 N
GLYMA09G33590 Glycine max GLYMA09G33590 N
GLYMA14G36370 Glycine max GLYMA14G36370 N
Gorai.002G137900 Gossypium raimondii Gorai.002G137900 N
Gorai.003G035900 Gossypium raimondii Gorai.003G035900 N
Gorai.007G229900 Gossypium raimondii Gorai.007G229900 N
Gorai.009G226200 Gossypium raimondii Gorai.009G226200 N
Gorai.009G337700 Gossypium raimondii Gorai.009G337700 N
Gorai.010G031800 Gossypium raimondii Gorai.010G031800 N
GRMZM2G128807 Zea mays GRMZM2G128807 N
GRMZM2G173372 Zea mays GRMZM2G173372 N
GRMZM2G435015 Zea mays GRMZM2G435015 N
GSMUA_Achr1G26300_001 Musa acuminata GSMUA_Achr1G26300_001 N
GSMUA_Achr7G03930_001 Musa acuminata GSMUA_Achr7G03930_001 N
GSMUA_Achr8G34120_001 Musa acuminata GSMUA_Achr8G34120_001 N
GSMUA_AchrUn_randomG16890_001 Musa acuminata GSMUA_AchrUn_randomG16890_001 N
LjSGA_043777.1 Lotus japonicus LjSGA_043777.1 N
LPERR03G02580 Leersia perrieri LPERR03G02580 N
LPERR06G23280 Leersia perrieri LPERR06G23280 N
Lus10002160.g Linum usitatissimum Lus10002160.g N
Lus10039631.g Linum usitatissimum Lus10039631.g N
MDP0000175282 Malus domestica MDP0000175282 N
MDP0000178782 Malus domestica MDP0000178782 N
MDP0000312274 Malus domestica MDP0000312274 N
MDP0000603926 Malus domestica MDP0000603926 N
MDP0000644807 Malus domestica MDP0000644807 N
mgf001568m Mimulus guttatus mgf001568m N
mgf011848m Mimulus guttatus mgf011848m N
mgf017272m Mimulus guttatus mgf017272m N
MLOC_55768 Hordeum vulgare MLOC_55768 N
MTR_3g111290 Medicago truncatula MTR_3g111290 N
MTR_5g030770 Medicago truncatula MTR_5g030770 N
OB03G12820 Oryza brachyantha OB03G12820 N
OBART03G02840 Oryza barthii OBART03G02840 N
OBART06G27800 Oryza barthii OBART06G27800 N
OBART06G27860 Oryza barthii OBART06G27860 N
OBART10G17440 Oryza barthii OBART10G17440 N
OGLUM03G02750 Oryza glumaepatula OGLUM03G02750 N
OGLUM06G29220 Oryza glumaepatula OGLUM06G29220 N
OGLUM10G17470 Oryza glumaepatula OGLUM10G17470 N
OLONG_005983 Oryza longistaminata OLONG_005983 N
OMERI03G02800 Oryza meridionalis OMERI03G02800 N
OMERI06G27810 Oryza meridionalis OMERI06G27810 N
OMERI10G13920 Oryza meridionalis OMERI10G13920 N
ONIVA03G02430 Oryza nivara ONIVA03G02430 N
ONIVA06G30800 Oryza nivara ONIVA06G30800 N
ONIVA10G19680 Oryza nivara ONIVA10G19680 N
OPUNC03G02570 Oryza punctata OPUNC03G02570 N
OPUNC06G25390 Oryza punctata OPUNC06G25390 N
OPUNC10G15730 Oryza punctata OPUNC10G15730 N
orange1.1g018897m.g Citrus sinensis orange1.1g018897m.g N
orange1.1g038389m.g Citrus sinensis orange1.1g038389m.g N
ORGLA03G0026100 Oryza glaberrima ORGLA03G0026100 N
ORGLA10G0124500 Oryza glaberrima ORGLA10G0124500 N
ORUFI03G02540 Oryza rufipogon ORUFI03G02540 N
ORUFI06G29810 Oryza rufipogon ORUFI06G29810 N
ORUFI10G18500 Oryza rufipogon ORUFI10G18500 N
OS03G0135700 Oryza sativa OS03G0135700 N
OS10G0544200 Oryza sativa OS10G0544200 N
Pavir.Ia04450 Panicum virgatum Pavir.Ia04450 N
Pavir.Ib00206 Panicum virgatum Pavir.Ib00206 N
Pavir.J18000 Panicum virgatum Pavir.J18000 N
Pavir.J18595 Panicum virgatum Pavir.J18595 N
Pavir.J25463 Panicum virgatum Pavir.J25463 N
PDK_20s1771821g001 Phoenix dactylifera PDK_20s1771821g001 N
PGSC0003DMG400002056 Solanum tuberosum PGSC0003DMG400002056 N
PGSC0003DMG400006394 Solanum tuberosum PGSC0003DMG400006394 N
PGSC0003DMG400010388 Solanum tuberosum PGSC0003DMG400010388 N
PGSC0003DMG400030616 Solanum tuberosum PGSC0003DMG400030616 N
PK12634.1 Cannabis sativa PK12634.1 N
Pm002283 Prunus mume Pm002283 N
Pm004330 Prunus mume Pm004330 N
POPTR_0002s10910 Populus trichocarpa POPTR_0002s10910 N
PRUPE_ppa007656mg Prunus persica PRUPE_ppa007656mg N
PRUPE_ppa016514mg Prunus persica PRUPE_ppa016514mg N
SapurV1A.0004s0900 Salix purpurea SapurV1A.0004s0900 N
Sb01g047940 Sorghum bicolor Sb01g047940 N
Sb10g030470 Sorghum bicolor Sb10g030470 N
SELMODRAFT_77288 Selaginella moellendorffii SELMODRAFT_77288 N
Si006877m.g Setaria italica Si006877m.g N
Si036470m.g Setaria italica Si036470m.g N
Solyc02g063430.2 Solanum lycopersicum Solyc02g063430.2 N
Solyc02g091690.2 Solanum lycopersicum Solyc02g091690.2 N
Solyc12g088130.1 Solanum lycopersicum Solyc12g088130.1 N
TCM_000915 Theobroma cacao TCM_000915 N
TCM_034574 Theobroma cacao TCM_034574 N
Thhalv10004732m.g Eutrema salsugineum Thhalv10004732m.g N
Traes_3AS_1FD49785C Triticum aestivum Traes_3AS_1FD49785C N
Traes_4BL_0F2281616 Triticum aestivum Traes_4BL_0F2281616 N
Traes_4DL_0075CCAD9 Triticum aestivum Traes_4DL_0075CCAD9 N
Traes_4DL_1C0F38900 Triticum aestivum Traes_4DL_1C0F38900 N
Traes_4DL_5851FBD0C Triticum aestivum Traes_4DL_5851FBD0C N
Traes_4DL_ACF3BE9C5 Triticum aestivum Traes_4DL_ACF3BE9C5 N
Traes_7DL_67FF12B6A Triticum aestivum Traes_7DL_67FF12B6A N
TRIUR3_23651 Triticum urartu TRIUR3_23651 N
TRIUR3_29035 Triticum urartu TRIUR3_29035 N
VIT_00s1312g00010 Vitis vinifera VIT_00s1312g00010 N
VIT_17s0000g03550 Vitis vinifera VIT_17s0000g03550 N
VIT_18s0001g08040 Vitis vinifera VIT_18s0001g08040 N