Pavir.J18000 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J18000 T050894_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J18000.1.p bHLH 95 142

Links

Other bHLH family TFs
Other Panicum virgatum TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH61 Arabidopsis thaliana AT5G10570 N 0.914
BHLH93 Arabidopsis thaliana AT5G65640 N 0.914
BGIOSGA023624 Oryza indica BGIOSGA023624 N 0.914
Bo3g097890 Brassica oleracea Bo3g097890 N 0.914
Bo9g171940 Brassica oleracea Bo9g171940 N 0.914
Bra024404 Brassica rapa Bra024404 N 0.914
BRADI1G30000 Brachypodium distachyon BRADI1G30000 N 0.914
fgenesh2_kg.6__1024__AT5G10570.1 Arabidopsis lyrata fgenesh2_kg.6__1024__AT5G10570.1 N 0.914
bHLH093 Arabidopsis lyrata fgenesh2_kg.8__2611__AT5G65640.1 N 0.914
GLYMA01G02390 Glycine max GLYMA01G02390 N 0.914
GLYMA04G09580 Glycine max GLYMA04G09580 N 0.914
GLYMA06G09670 Glycine max GLYMA06G09670 N 0.914
GLYMA08G37240 Glycine max GLYMA08G37240 N 0.914
GLYMA09G33590 Glycine max GLYMA09G33590 N 0.914
GRMZM2G128807 Zea mays GRMZM2G128807 N 0.914
GSMUA_Achr1G26300_001 Musa acuminata GSMUA_Achr1G26300_001 N 0.914
GSMUA_Achr7G03930_001 Musa acuminata GSMUA_Achr7G03930_001 N 0.914
GSMUA_Achr8G34120_001 Musa acuminata GSMUA_Achr8G34120_001 N 0.914
LPERR06G23280 Leersia perrieri LPERR06G23280 N 0.914
MTR_5g030770 Medicago truncatula MTR_5g030770 N 0.914
OBART06G27800 Oryza barthii OBART06G27800 N 0.914
OBART06G27860 Oryza barthii OBART06G27860 N 0.914
OGLUM06G29220 Oryza glumaepatula OGLUM06G29220 N 0.914
OMERI06G27810 Oryza meridionalis OMERI06G27810 N 0.914
ONIVA06G30800 Oryza nivara ONIVA06G30800 N 0.914
OPUNC06G25390 Oryza punctata OPUNC06G25390 N 0.914
ORUFI06G29810 Oryza rufipogon ORUFI06G29810 N 0.914
PGSC0003DMG400006394 Solanum tuberosum PGSC0003DMG400006394 N 0.914
PGSC0003DMG400010388 Solanum tuberosum PGSC0003DMG400010388 N 0.914
PGSC0003DMG400030616 Solanum tuberosum PGSC0003DMG400030616 N 0.914
POPTR_0002s10910 Populus trichocarpa POPTR_0002s10910 N 0.914
PRUPE_ppa007656mg Prunus persica PRUPE_ppa007656mg N 0.914
PRUPE_ppa016514mg Prunus persica PRUPE_ppa016514mg N 0.914
Sb10g030470 Sorghum bicolor Sb10g030470 N 0.914
Si006877m.g Setaria italica Si006877m.g N 0.914
Solyc02g063430.2 Solanum lycopersicum Solyc02g063430.2 N 0.914
Solyc02g091690.2 Solanum lycopersicum Solyc02g091690.2 N 0.914
TCM_000915 Theobroma cacao TCM_000915 N 0.914
TCM_034574 Theobroma cacao TCM_034574 N 0.914
Traes_7DL_67FF12B6A Triticum aestivum Traes_7DL_67FF12B6A N 0.914
VIT_00s1312g00010 Vitis vinifera VIT_00s1312g00010 N 0.914
VIT_17s0000g03550 Vitis vinifera VIT_17s0000g03550 N 0.914
VIT_18s0001g08040 Vitis vinifera VIT_18s0001g08040 N 0.914
Ca_11531 Cicer arietinum Ca_11531 N 0.914
Pm002283 Prunus mume Pm002283 N 0.914
Pm004330 Prunus mume Pm004330 N 0.914
28179.m000457 Ricinus communis 28179.m000457 N 0.914
29596.m000688 Ricinus communis 29596.m000688 N 0.914
cassava1707.valid.m1 Manihot esculenta cassava1707.valid.m1 N 0.914
cassava20174.m1 Manihot esculenta cassava20174.m1 N 0.914
cassava35909.valid.m1 Manihot esculenta cassava35909.valid.m1 N 0.914
cassava42105.valid.m1 Manihot esculenta cassava42105.valid.m1 N 0.914
Cucsa.103760 Cucumis sativus Cucsa.103760 N 0.914
mgf011848m Mimulus guttatus mgf011848m N 0.914
mgf017272m Mimulus guttatus mgf017272m N 0.914
Bostr.0568s0223 Boechera stricta Bostr.0568s0223 N 0.914
Bostr.13175s0042 Boechera stricta Bostr.13175s0042 N 0.914
Cagra.0917s0023 Capsella grandiflora Cagra.0917s0023 N 0.914
Carubv10026606m.g Capsella rubella Carubv10026606m.g N 0.914
Ciclev10001683m.g Citrus clementina Ciclev10001683m.g N 0.914
Ciclev10025967m.g Citrus clementina Ciclev10025967m.g N 0.914
Eucgr.F00459 Eucalyptus grandis Eucgr.F00459 N 0.914
Eucgr.F02171 Eucalyptus grandis Eucgr.F02171 N 0.914
Eucgr.I00608 Eucalyptus grandis Eucgr.I00608 N 0.914
gene05560-v1.0-hybrid Fragaria vesca gene05560-v1.0-hybrid N 0.914
gene26895-v1.0-hybrid Fragaria vesca gene26895-v1.0-hybrid N 0.914
Gorai.002G137900 Gossypium raimondii Gorai.002G137900 N 0.914
Gorai.003G035900 Gossypium raimondii Gorai.003G035900 N 0.914
Gorai.007G229900 Gossypium raimondii Gorai.007G229900 N 0.914
Gorai.009G226200 Gossypium raimondii Gorai.009G226200 N 0.914
Gorai.010G031800 Gossypium raimondii Gorai.010G031800 N 0.914
Lus10002160.g Linum usitatissimum Lus10002160.g N 0.914
Lus10039631.g Linum usitatissimum Lus10039631.g N 0.914
MDP0000175282 Malus domestica MDP0000175282 N 0.914
MDP0000178782 Malus domestica MDP0000178782 N 0.914
MDP0000312274 Malus domestica MDP0000312274 N 0.914
MDP0000603926 Malus domestica MDP0000603926 N 0.914
MDP0000644807 Malus domestica MDP0000644807 N 0.914
orange1.1g018897m.g Citrus sinensis orange1.1g018897m.g N 0.914
orange1.1g038389m.g Citrus sinensis orange1.1g038389m.g N 0.914
SapurV1A.0004s0900 Salix purpurea SapurV1A.0004s0900 N 0.914
Thhalv10004732m.g Eutrema salsugineum Thhalv10004732m.g N 0.914
PK12634.1 Cannabis sativa PK12634.1 N 0.914
chr2.CM0177.460.nc Lotus japonicus chr2.CM0177.460.nc N 0.914
LjSGA_043777.1 Lotus japonicus LjSGA_043777.1 N 0.914
PDK_20s1771821g001 Phoenix dactylifera PDK_20s1771821g001 N 0.914
GRMZM2G435015 Zea mays GRMZM2G435015 N 0.894
PGSC0003DMG400002056 Solanum tuberosum PGSC0003DMG400002056 N 0.894
Solyc12g088130.1 Solanum lycopersicum Solyc12g088130.1 N 0.894
BGIOSGA011499 Oryza indica BGIOSGA011499 N 0.890
GRMZM2G173372 Zea mays GRMZM2G173372 N 0.890
GSMUA_AchrUn_randomG16890_001 Musa acuminata GSMUA_AchrUn_randomG16890_001 N 0.890
LPERR03G02580 Leersia perrieri LPERR03G02580 N 0.890
MLOC_55768 Hordeum vulgare MLOC_55768 N 0.890
OB03G12820 Oryza brachyantha OB03G12820 N 0.890
OBART03G02840 Oryza barthii OBART03G02840 N 0.890
OGLUM03G02750 Oryza glumaepatula OGLUM03G02750 N 0.890
OLONG_005983 Oryza longistaminata OLONG_005983 N 0.890
OMERI03G02800 Oryza meridionalis OMERI03G02800 N 0.890
ONIVA03G02430 Oryza nivara ONIVA03G02430 N 0.890
OPUNC03G02570 Oryza punctata OPUNC03G02570 N 0.890
ORGLA03G0026100 Oryza glaberrima ORGLA03G0026100 N 0.890
ORUFI03G02540 Oryza rufipogon ORUFI03G02540 N 0.890
OS03G0135700 Oryza sativa OS03G0135700 N 0.890
Sb01g047940 Sorghum bicolor Sb01g047940 N 0.890
Si036470m.g Setaria italica Si036470m.g N 0.890
Traes_4DL_0075CCAD9 Triticum aestivum Traes_4DL_0075CCAD9 N 0.890
Traes_4DL_1C0F38900 Triticum aestivum Traes_4DL_1C0F38900 N 0.890
Traes_4DL_5851FBD0C Triticum aestivum Traes_4DL_5851FBD0C N 0.890
TRIUR3_29035 Triticum urartu TRIUR3_29035 N 0.890
Cla014300 Citrullus lanatus Cla014300 N 0.890
evm.TU.supercontig_129.19 Carica papaya evm.TU.supercontig_129.19 N 0.890
Pavir.Ia04450 Panicum virgatum Pavir.Ia04450 N 0.890
Pavir.Ib00206 Panicum virgatum Pavir.Ib00206 N 0.890
Pavir.J18595 Panicum virgatum Pavir.J18595 N 0.890
Pavir.J25463 Panicum virgatum Pavir.J25463 N 0.890
F775_00539 Aegilops tauschii F775_00539 N 0.888
GLYMA02G38240 Glycine max GLYMA02G38240 N 0.888
GLYMA14G36370 Glycine max GLYMA14G36370 N 0.888
MTR_3g111290 Medicago truncatula MTR_3g111290 N 0.888
Traes_4DL_ACF3BE9C5 Triticum aestivum Traes_4DL_ACF3BE9C5 N 0.888
Ca_04981 Cicer arietinum Ca_04981 N 0.888
Cla022518 Citrullus lanatus Cla022518 N 0.888
Cucsa.160860 Cucumis sativus Cucsa.160860 N 0.888
Cagra.1085s0002 Capsella grandiflora Cagra.1085s0002 N 0.888
Carubv10001486m.g Capsella rubella Carubv10001486m.g N 0.888
chr2.CM0504.20.nd Lotus japonicus chr2.CM0504.20.nd N 0.888
Bo2g168250 Brassica oleracea Bo2g168250 N 0.884
Bra031852 Brassica rapa Bra031852 N 0.884
Aquca_010_00033 Aquilegia coerulea Aquca_010_00033 N 0.884
TRIUR3_23651 Triticum urartu TRIUR3_23651 N 0.864
Cla023435 Citrullus lanatus Cla023435 N 0.864
Cucsa.312190 Cucumis sativus Cucsa.312190 N 0.864
BGIOSGA031474 Oryza indica BGIOSGA031474 N 0.860
BRADI1G76030 Brachypodium distachyon BRADI1G76030 N 0.860
OBART10G17440 Oryza barthii OBART10G17440 N 0.860
OGLUM10G17470 Oryza glumaepatula OGLUM10G17470 N 0.860
OMERI10G13920 Oryza meridionalis OMERI10G13920 N 0.860
ONIVA10G19680 Oryza nivara ONIVA10G19680 N 0.860
OPUNC10G15730 Oryza punctata OPUNC10G15730 N 0.860
ORGLA10G0124500 Oryza glaberrima ORGLA10G0124500 N 0.860
ORUFI10G18500 Oryza rufipogon ORUFI10G18500 N 0.860
OS10G0544200 Oryza sativa OS10G0544200 N 0.860
evm.TU.supercontig_177.1 Carica papaya evm.TU.supercontig_177.1 N 0.860
30131.m006993 Ricinus communis 30131.m006993 I 0.856
cassava7475.valid.m1 Manihot esculenta cassava7475.valid.m1 I 0.856
SELMODRAFT_77288 Selaginella moellendorffii SELMODRAFT_77288 N 0.855
Traes_3AS_1FD49785C Triticum aestivum Traes_3AS_1FD49785C N 0.851
mgf001568m Mimulus guttatus mgf001568m N 0.849
Gorai.009G337700 Gossypium raimondii Gorai.009G337700 N 0.848
Traes_4BL_0F2281616 Triticum aestivum Traes_4BL_0F2281616 N 0.847