Ca_19597 (Cicer arietinum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ca_19597 T246315_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.806 0.806
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.806 0.806
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.774 0.774
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.774 0.774
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_19597 LOB 1 31

Links

Other LOB family TFs
Other Cicer arietinum TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD33 Arabidopsis lyrata Al_scaffold_0006_527 N 0.710
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.839
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.710
Cagra.2117s0054 Capsella grandiflora Cagra.2117s0054 N 0.742
Carubv10002921m.g Capsella rubella Carubv10002921m.g N 0.742
F775_22967 Aegilops tauschii F775_22967 I 0.710
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.806
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.871
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.774
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.742
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.903
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.710
OB10G12360 Oryza brachyantha OB10G12360 I 0.742
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.839
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.710
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.710
PK23185.1 Cannabis sativa PK23185.1 I 0.871
PK25573.1 Cannabis sativa PK25573.1 I 0.774
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.710
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.806
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.871
Si015156m.g Setaria italica Si015156m.g I 0.710
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.710
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.710