OGLUM04G11230 (Oryza glumaepatula)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 OGLUM04G11230 T249545_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.850 0.620
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.850 0.620
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.850 0.620
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM04G11230.1 MADF 105 182

Links

Other MADF family TFs
Other Oryza glumaepatula TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G17310 Arabidopsis thaliana AT1G17310 N
AT1G72350 Arabidopsis thaliana AT1G72350 N
Bo6g091550 Brassica oleracea Bo6g091550 N
Bo6g115840 Brassica oleracea Bo6g115840 N
Bo8g104960 Brassica oleracea Bo8g104960 N
Bostr.10273s0116 Boechera stricta Bostr.10273s0116 N
Bostr.7128s0342 Boechera stricta Bostr.7128s0342 N
Bra003884 Brassica rapa Bra003884 N
Bra026674 Brassica rapa Bra026674 N
Cagra.1013s0063 Capsella grandiflora Cagra.1013s0063 N
Carubv10011075m.g Capsella rubella Carubv10011075m.g N
Carubv10021825m.g Capsella rubella Carubv10021825m.g N
fgenesh2_kg.1__1889__AT1G17310.1 Arabidopsis lyrata fgenesh2_kg.1__1889__AT1G17310.1 N
scaffold_202161.1 Arabidopsis lyrata scaffold_202161.1 N
Thhalv10009669m.g Eutrema salsugineum Thhalv10009669m.g N
Thhalv10019133m.g Eutrema salsugineum Thhalv10019133m.g N