Ciclev10006519m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10006519m.g T257860_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10006519m MADS box 10 58

Links

Other MADS box family TFs
Other Citrus clementina TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_08934 Cicer arietinum Ca_08934 I 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.771
Cla005226 Citrullus lanatus Cla005226 I 0.889
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.792
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.812
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.000
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.000
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.708
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.756
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.000
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.000
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.000
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.000
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.000