evm.TU.supercontig_265.1 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.supercontig_265.1 T258212_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_265.1 MADS box 10 56

Links

Other MADS box family TFs
Other Carica papaya TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MBD11 Arabidopsis thaliana AT3G15790 N 0.000
Bra027207 Brassica rapa Bra027207 N 0.000
Ca_19192 Cicer arietinum Ca_19192 N 0.000
Cla012920 Citrullus lanatus Cla012920 N 0.000
Cla016961 Citrullus lanatus Cla016961 N 0.000
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.000
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.000
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.000
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N 0.000
Lus10002168.g Linum usitatissimum Lus10002168.g N 0.000
MDP0000462461 Malus domestica MDP0000462461 N 0.000
Pm013666 Prunus mume Pm013666 N 0.000
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.000
MBD11 Arabidopsis lyrata scaffold_301848.1 N 0.000
Solyc06g068140.2 Solanum lycopersicum Solyc06g068140.2 N 0.000
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.000