Thhalv10028184m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10028184m.g T259198_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028184m MADS box 33 77

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.723
AT5G26865 Arabidopsis thaliana AT5G26865 N 0.771
AGL105 Arabidopsis thaliana AT5G37415 I 0.731
AGL77 Arabidopsis thaliana AT5G38740 I 0.723
AGL81 Arabidopsis thaliana AT5G39750 I 0.723
AGL98 Arabidopsis thaliana AT5G39810 I 0.702
AGL76 Arabidopsis thaliana AT5G40120 I 0.723
AGL43 Arabidopsis thaliana AT5G40220 I 0.733
AGL75 Arabidopsis thaliana AT5G41200 I 0.750
Bo00615s090 Brassica oleracea Bo00615s090 I 0.756
Bo4g139260 Brassica oleracea Bo4g139260 I 0.725
Bo4g139560 Brassica oleracea Bo4g139560 N 0.756
Bo4g139620 Brassica oleracea Bo4g139620 N 0.773
Bo4g139640 Brassica oleracea Bo4g139640 N 0.756
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.717
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.702
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.729
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.733
Bra025607 Brassica rapa Bra025607 N 0.814
Bra025609 Brassica rapa Bra025609 I 0.723
Bra025619 Brassica rapa Bra025619 N 0.756
Bra031864 Brassica rapa Bra031864 I 0.733
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.717
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.739
Thhalv10005313m.g Eutrema salsugineum Thhalv10005313m.g I 0.723
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I 0.935