1645_YBR182C (Saccharomyces bayanus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 1645_YBR182C T259296_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.979 0.979
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.979 0.979
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.896 0.896
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.896 0.896
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
1645_YBR182C MADS box 10 57

Links

Other MADS box family TFs
Other Saccharomyces bayanus TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30128.m008990 Ricinus communis 30128.m008990 N 0.000
30147.m014198 Ricinus communis 30147.m014198 N 0.000
AMTR_s00009p00257950 Amborella trichopoda AMTR_s00009p00257950 N 0.000
AMTR_s00057p00069720 Amborella trichopoda AMTR_s00057p00069720 N 0.000
AMTR_s00087p00039380 Amborella trichopoda AMTR_s00087p00039380 N 0.000
AMTR_s00133p00075670 Amborella trichopoda AMTR_s00133p00075670 N 0.000
MYB60 Arabidopsis thaliana AT1G08810 D 0.000
MYB3 Arabidopsis thaliana AT1G22640 D 0.000
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.000
ATMYB16 Arabidopsis thaliana AT5G15310 I 0.000
BGIOSGA010548 Oryza indica BGIOSGA010548 N 0.000
Bo4g198650 Brassica oleracea Bo4g198650 N 0.000
Bo8g104180 Brassica oleracea Bo8g104180 N 0.000
Bostr.13129s0196 Boechera stricta Bostr.13129s0196 I 0.000
Bra024685 Brassica rapa Bra024685 N 0.000
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.000
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N 0.000
cassava15703.m1 Manihot esculenta cassava15703.m1 N 0.000
cassava2662.m1 Manihot esculenta cassava2662.m1 N 0.000
cassava45648.m1 Manihot esculenta cassava45648.m1 N 0.000
Ca_10215 Cicer arietinum Ca_10215 N 0.000
chr1.CM0600.120.nd Lotus japonicus chr1.CM0600.120.nd N 0.000
chr5.CM0071.390.nd Lotus japonicus chr5.CM0071.390.nd N 0.000
Ciclev10023519m.g Citrus clementina Ciclev10023519m.g N 0.000
CM0385.220.nd Lotus japonicus CM0385.220.nd N 0.000
Cucsa.051050 Cucumis sativus Cucsa.051050 I 0.000
Eucgr.B03766 Eucalyptus grandis Eucgr.B03766 N 0.000
evm.TU.supercontig_1.55 Carica papaya evm.TU.supercontig_1.55 N 0.000
evm.TU.supercontig_34.3 Carica papaya evm.TU.supercontig_34.3 N 0.000
e_gw1.1.4.1 Physcomitrella patens e_gw1.1.4.1 N 0.000
F775_20859 Aegilops tauschii F775_20859 N 0.000
F775_42755 Aegilops tauschii F775_42755 N 0.000
GLYMA0041S00310 Glycine max GLYMA0041S00310 I 0.000
GLYMA05G03780 Glycine max GLYMA05G03780 I 0.000
GLYMA09G04370 Glycine max GLYMA09G04370 I 0.000
GLYMA14G10483 Glycine max GLYMA14G10483 I 0.000
GLYMA16G16170 Glycine max GLYMA16G16170 N 0.000
Gorai.001G024300 Gossypium raimondii Gorai.001G024300 I 0.000
Gorai.001G239000 Gossypium raimondii Gorai.001G239000 I 0.000
Gorai.008G086400 Gossypium raimondii Gorai.008G086400 I 0.000
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I 0.000
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.000
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.000
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N 0.000
LjSGA_034303.1 Lotus japonicus LjSGA_034303.1 N 0.000
LjSGA_057038.1 Lotus japonicus LjSGA_057038.1 N 0.000
LjSGA_057664.1 Lotus japonicus LjSGA_057664.1 N 0.000
LjSGA_064890.1.1 Lotus japonicus LjSGA_064890.1.1 N 0.000
MDP0000158409 Malus domestica MDP0000158409 N 0.000
MDP0000413041 Malus domestica MDP0000413041 N 0.000
MDP0000879675 Malus domestica MDP0000879675 N 0.000
MDP0000911051 Malus domestica MDP0000911051 N 0.000
mg021480m Mimulus guttatus mg021480m N 0.000
mgf017705m Mimulus guttatus mgf017705m N 0.000
mgf018056m Mimulus guttatus mgf018056m N 0.000
mgf020736m Mimulus guttatus mgf020736m N 0.000
mgf021965m Mimulus guttatus mgf021965m N 0.000
mgf023771m Mimulus guttatus mgf023771m N 0.000
MLOC_12474 Hordeum vulgare MLOC_12474 N 0.000
MLOC_39554 Hordeum vulgare MLOC_39554 I 0.000
MLOC_71332 Hordeum vulgare MLOC_71332 N 0.000
MTR_1g087540 Medicago truncatula MTR_1g087540 N 0.000
OB06G28240 Oryza brachyantha OB06G28240 N 0.000
OLONG_025203 Oryza longistaminata OLONG_025203 N 0.000
orange1.1g019307m.g Citrus sinensis orange1.1g019307m.g I 0.000
ORGLA02G0219000 Oryza glaberrima ORGLA02G0219000 N 0.000
OS04G0517100 Oryza sativa OS04G0517100 N 0.000
OS05G0132700 Oryza sativa OS05G0132700 N 0.000
OS05G0350900 Oryza sativa OS05G0350900 N 0.000
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N 0.000
Pavir.Eb00654 Panicum virgatum Pavir.Eb00654 I 0.000
Pavir.Eb02286 Panicum virgatum Pavir.Eb02286 N 0.000
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.000
Pavir.Ia03786 Panicum virgatum Pavir.Ia03786 N 0.000
Pavir.J11191 Panicum virgatum Pavir.J11191 N 0.000
Pavir.J14839 Panicum virgatum Pavir.J14839 N 0.000
Pavir.J25377 Panicum virgatum Pavir.J25377 N 0.000
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N 0.000
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I 0.000
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N 0.000
PK00358.1 Cannabis sativa PK00358.1 N 0.000
PK15577.1 Cannabis sativa PK15577.1 N 0.000
PK21717.1 Cannabis sativa PK21717.1 N 0.000
PK22972.1 Cannabis sativa PK22972.1 N 0.000
Pm000007 Prunus mume Pm000007 N 0.000
Pm015551 Prunus mume Pm015551 N 0.000
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I 0.000
POPTR_0017s10780 Populus trichocarpa POPTR_0017s10780 N 0.000
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I 0.000
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I 0.000
SapurV1A.0876s0040 Salix purpurea SapurV1A.0876s0040 I 0.000
SapurV1A.0890s0050 Salix purpurea SapurV1A.0890s0050 I 0.000
SapurV1A.1876s0010 Salix purpurea SapurV1A.1876s0010 N 0.000
SapurV1A.3377s0010 Salix purpurea SapurV1A.3377s0010 I 0.000
Solyc03g098270.1 Solanum lycopersicum Solyc03g098270.1 N 0.000
TCM_041010 Theobroma cacao TCM_041010 I 0.000
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N 0.000
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N 0.000
Traes_5AS_D238844BB Triticum aestivum Traes_5AS_D238844BB N 0.000
Traes_6AL_C0A2B4F041 Triticum aestivum Traes_6AL_C0A2B4F041 N 0.000
Traes_7AS_ADDEF000C Triticum aestivum Traes_7AS_ADDEF000C N 0.000
Traes_7AS_FD974A17F Triticum aestivum Traes_7AS_FD974A17F N 0.000
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N 0.000