LjSGA_024860.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_024860.1 T259373_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_024860.1 MADS box 10 58

Links

Other MADS box family TFs
Other Lotus japonicus TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28226.m000839 Ricinus communis 28226.m000839 I
AMTR_s00024p00224180 Amborella trichopoda AMTR_s00024p00224180 I
AMTR_s00024p00224470 Amborella trichopoda AMTR_s00024p00224470 I
AMTR_s00024p00224850 Amborella trichopoda AMTR_s00024p00224850 I
AMTR_s00024p00225650 Amborella trichopoda AMTR_s00024p00225650 N
Aquca_011_00570 Aquilegia coerulea Aquca_011_00570 N
TT2 Arabidopsis thaliana AT5G35550 I
MYB49 Arabidopsis thaliana AT5G54230 D
Bostr.26833s0846 Boechera stricta Bostr.26833s0846 I
Bostr.29044s0068 Boechera stricta Bostr.29044s0068 I
Cagra.1629s0007 Capsella grandiflora Cagra.1629s0007 I
Cagra.5428s0005 Capsella grandiflora Cagra.5428s0005 I
Carubv10006684m.g Capsella rubella Carubv10006684m.g I
Carubv10026801m.g Capsella rubella Carubv10026801m.g I
cassava2804.m1 Manihot esculenta cassava2804.m1 N
cassava31571.valid.m1 Manihot esculenta cassava31571.valid.m1 N
cassava33302.m1 Manihot esculenta cassava33302.m1 I
cassava3467.m1 Manihot esculenta cassava3467.m1 N
cassava41021.m1 Manihot esculenta cassava41021.m1 I
cassava6228.valid.m1 Manihot esculenta cassava6228.valid.m1 I
cassava9944.m1 Manihot esculenta cassava9944.m1 I
Ca_12762 Cicer arietinum Ca_12762 N
Ciclev10009521m.g Citrus clementina Ciclev10009521m.g N
Ciclev10026498m.g Citrus clementina Ciclev10026498m.g I
Cla012784 Citrullus lanatus Cla012784 N
Cucsa.340790 Cucumis sativus Cucsa.340790 N
Eucgr.B01869 Eucalyptus grandis Eucgr.B01869 I
Eucgr.B01964 Eucalyptus grandis Eucgr.B01964 I
Eucgr.C00722 Eucalyptus grandis Eucgr.C00722 I
Eucgr.C00723 Eucalyptus grandis Eucgr.C00723 I
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I
Eucgr.C00725 Eucalyptus grandis Eucgr.C00725 I
Eucgr.C02096 Eucalyptus grandis Eucgr.C02096 I
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N
Eucgr.E00407 Eucalyptus grandis Eucgr.E00407 N
Eucgr.F04422 Eucalyptus grandis Eucgr.F04422 N
Eucgr.F04423 Eucalyptus grandis Eucgr.F04423 N
evm.TU.supercontig_126.30 Carica papaya evm.TU.supercontig_126.30 N
evm.TU.supercontig_126.33 Carica papaya evm.TU.supercontig_126.33 I
evm.TU.supercontig_25.115 Carica papaya evm.TU.supercontig_25.115 N
evm.TU.supercontig_46.144 Carica papaya evm.TU.supercontig_46.144 N
fgenesh1_pg.C_scaffold_8001466 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001466 I
fgenesh1_pm.C_scaffold_8001114 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001114 I
TT2 Arabidopsis lyrata fgenesh2_kg.7__3049__AT5G35550.1 I
gene07416-v1.0-hybrid Fragaria vesca gene07416-v1.0-hybrid I
gene07418-v1.0-hybrid Fragaria vesca gene07418-v1.0-hybrid N
gene08694-v1.0-hybrid Fragaria vesca gene08694-v1.0-hybrid I
gene08880-v1.0-hybrid Fragaria vesca gene08880-v1.0-hybrid N
gene15383-v1.0-hybrid Fragaria vesca gene15383-v1.0-hybrid N
gene15386-v1.0-hybrid Fragaria vesca gene15386-v1.0-hybrid I
gene15390-v1.0-hybrid Fragaria vesca gene15390-v1.0-hybrid I
GLYMA01G41610 Glycine max GLYMA01G41610 N
GLYMA05G04900 Glycine max GLYMA05G04900 I
GLYMA11G03770 Glycine max GLYMA11G03770 N
GLYMA17G15270 Glycine max GLYMA17G15270 I
Gorai.001G015200 Gossypium raimondii Gorai.001G015200 I
Gorai.001G020400 Gossypium raimondii Gorai.001G020400 I
Gorai.001G020600 Gossypium raimondii Gorai.001G020600 I
Gorai.004G196800 Gossypium raimondii Gorai.004G196800 N
Gorai.009G040800 Gossypium raimondii Gorai.009G040800 N
Gorai.009G040900 Gossypium raimondii Gorai.009G040900 N
Gorai.009G146500 Gossypium raimondii Gorai.009G146500 N
Gorai.010G096800 Gossypium raimondii Gorai.010G096800 N
Gorai.012G011700 Gossypium raimondii Gorai.012G011700 N
GRMZM2G701063 Zea mays GRMZM2G701063 I
GSMUA_Achr10G17610_001 Musa acuminata GSMUA_Achr10G17610_001 I
GSMUA_Achr2G17960_001 Musa acuminata GSMUA_Achr2G17960_001 N
GSMUA_Achr3G07940_001 Musa acuminata GSMUA_Achr3G07940_001 I
GSMUA_Achr4G21700_001 Musa acuminata GSMUA_Achr4G21700_001 I
GSMUA_Achr6G04400_001 Musa acuminata GSMUA_Achr6G04400_001 I
GSMUA_Achr8G22690_001 Musa acuminata GSMUA_Achr8G22690_001 I
GSMUA_Achr9G27380_001 Musa acuminata GSMUA_Achr9G27380_001 I
Lus10000470.g Linum usitatissimum Lus10000470.g I
Lus10033438.g Linum usitatissimum Lus10033438.g I
MDP0000124555 Malus domestica MDP0000124555 N
MDP0000133817 Malus domestica MDP0000133817 I
MDP0000143276 Malus domestica MDP0000143276 I
MDP0000184538 Malus domestica MDP0000184538 I
MDP0000226215 Malus domestica MDP0000226215 N
MDP0000253904 Malus domestica MDP0000253904 N
MDP0000261265 Malus domestica MDP0000261265 I
MDP0000931057 Malus domestica MDP0000931057 N
mgf018735m Mimulus guttatus mgf018735m N
MTR_4g100720 Medicago truncatula MTR_4g100720 N
OB03G30160 Oryza brachyantha OB03G30160 I
OB06G16110 Oryza brachyantha OB06G16110 I
orange1.1g028922m.g Citrus sinensis orange1.1g028922m.g N
ORGLA03G0196700 Oryza glaberrima ORGLA03G0196700 I
ORGLA06G0059500 Oryza glaberrima ORGLA06G0059500 I
ORUFI06G06900 Oryza rufipogon ORUFI06G06900 I
Pavir.Db02046 Panicum virgatum Pavir.Db02046 I
PDK_20s13009436g002 Phoenix dactylifera PDK_20s13009436g002 I
PDK_20s1554342g001 Phoenix dactylifera PDK_20s1554342g001 I
PK05970.1 Cannabis sativa PK05970.1 I
PK08631.1 Cannabis sativa PK08631.1 N
Pm005572 Prunus mume Pm005572 I
Pm005577 Prunus mume Pm005577 I
Pm013277 Prunus mume Pm013277 N
Pm023419 Prunus mume Pm023419 N
Pm027045 Prunus mume Pm027045 I
Pm027047 Prunus mume Pm027047 I
Pm029489 Prunus mume Pm029489 I
POPTR_0001s16970 Populus trichocarpa POPTR_0001s16970 N
POPTR_0003s06320 Populus trichocarpa POPTR_0003s06320 N
POPTR_0003s07680 Populus trichocarpa POPTR_0003s07680 N
POPTR_0006s23780 Populus trichocarpa POPTR_0006s23780 I
POPTR_0017s02990 Populus trichocarpa POPTR_0017s02990 I
POPTR_0018s08500 Populus trichocarpa POPTR_0018s08500 N
PRUPE_ppa016135mg Prunus persica PRUPE_ppa016135mg N
PRUPE_ppa019380mg Prunus persica PRUPE_ppa019380mg I
PRUPE_ppa023768mg Prunus persica PRUPE_ppa023768mg I
PRUPE_ppa024074mg Prunus persica PRUPE_ppa024074mg I
PRUPE_ppa024533mg Prunus persica PRUPE_ppa024533mg N
PRUPE_ppa026916mg Prunus persica PRUPE_ppa026916mg I
SapurV1A.0002s0910 Salix purpurea SapurV1A.0002s0910 N
SapurV1A.0102s0340 Salix purpurea SapurV1A.0102s0340 I
SapurV1A.0177s0330 Salix purpurea SapurV1A.0177s0330 N
SapurV1A.0177s0340 Salix purpurea SapurV1A.0177s0340 N
SapurV1A.0390s0200 Salix purpurea SapurV1A.0390s0200 I
SapurV1A.0435s0070 Salix purpurea SapurV1A.0435s0070 N
SapurV1A.0710s0030 Salix purpurea SapurV1A.0710s0030 I
SapurV1A.1087s0090 Salix purpurea SapurV1A.1087s0090 N
SapurV1A.1360s0110 Salix purpurea SapurV1A.1360s0110 N
SapurV1A.1730s0020 Salix purpurea SapurV1A.1730s0020 I
SapurV1A.4052s0010 Salix purpurea SapurV1A.4052s0010 N
TCM_000535 Theobroma cacao TCM_000535 I
TCM_015933 Theobroma cacao TCM_015933 I
TCM_029126 Theobroma cacao TCM_029126 N
TCM_037379 Theobroma cacao TCM_037379 I
TCM_037383 Theobroma cacao TCM_037383 I
Thhalv10014125m.g Eutrema salsugineum Thhalv10014125m.g I
VIT_00s0341g00050 Vitis vinifera VIT_00s0341g00050 N
VIT_04s0008g01810 Vitis vinifera VIT_04s0008g01810 I
VIT_04s0008g01840 Vitis vinifera VIT_04s0008g01840 I
VIT_04s0008g01870 Vitis vinifera VIT_04s0008g01870 I
VIT_09s0002g01380 Vitis vinifera VIT_09s0002g01380 N