Bo1g010040 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo1g010040 T267061_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.878 0.957
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.878 0.957
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.824 0.864
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.769 0.836
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.739 0.807
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.676 0.771
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.669 0.707
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g010040.1 Myb 28 74
Bo1g010040.1 Myb 80 126
Bo1g010040.1 Myb 132 177

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_13991 Ancylostoma caninum ANCCAN_13991 I 0.000
ANCDUO_19569 Ancylostoma duodenale ANCDUO_19569 I 0.000
ASIM_0000241101 Anisakis simplex ASIM_0000241101 I 0.000
ASIM_0001608201 Anisakis simplex ASIM_0001608201 I 0.000
Bm2567 Brugia malayi Bm2567 D 0.000
BTMF_0001653601 Brugia timori BTMF_0001653601 I 0.000
BTMF_0001659501 Brugia timori BTMF_0001659501 I 0.000
BXY_0200700 Bursaphelenchus xylophilus BXY_0200700 I 0.000
BXY_0352300 Bursaphelenchus xylophilus BXY_0352300 I 0.000
CBG09413 Caenorhabditis briggsae CBG09413 D 0.000
CBN06605 Caenorhabditis brenneri CBN06605 D 0.000
CJA05020 Caenorhabditis japonica CJA05020 I 0.000
CJA05633_CONSTRUCT PBM CONSTRUCTS CJA05633_CONSTRUCT D 0.000
CJA37832 Caenorhabditis japonica CJA37832 I 0.000
CRE31027 Caenorhabditis remanei CRE31027 I 0.000
DME_0001004201 Dracunculus medinensis DME_0001004201 I 0.000
EEL_0000689901 Elaeophora elaphi EEL_0000689901 I 0.000
EVEC_0001123001 Enterobius vermicularis EVEC_0001123001 I 0.000
Hba_18605 Heterorhabditis bacteriophora Hba_18605 I 0.000
L596_g998 Steinernema carpocapsae L596_g998 I 0.000
L889_g10733 Steinernema feltiae L889_g10733 I 0.000
L892_g22881 Steinernema scapterisci L892_g22881 I 0.000
L892_g27879 Steinernema scapterisci L892_g27879 I 0.000
L893_g31098 Steinernema glaseri L893_g31098 I 0.000
L898_g30067 Steinernema monticolum L898_g30067 I 0.000
L898_g33808 Steinernema monticolum L898_g33808 I 0.000
LOAG_11460 Loa loa LOAG_11460 I 0.000
nAv.1.0.1.g01085 Acanthocheilonema viteae nAv.1.0.1.g01085 I 0.000
nAv.1.0.1.g09212 Acanthocheilonema viteae nAv.1.0.1.g09212 I 0.000
NBR_0000774001 Nippostrongylus brasiliensis NBR_0000774001 I 0.000
nDi.2.2.2.g08811 Dirofilaria immitis nDi.2.2.2.g08811 I 0.000
nDi.2.2.2.g10419 Dirofilaria immitis nDi.2.2.2.g10419 I 0.000
NECAME_07661 Necator americanus NECAME_07661 I 0.000
nLs.2.1.2.g05589 Litomosoides sigmodontis nLs.2.1.2.g05589 I 0.000
nOo.2.0.1.g05035 Onchocerca ochengi nOo.2.0.1.g05035 I 0.000
nOo.2.0.1.g12565 Onchocerca ochengi nOo.2.0.1.g12565 I 0.000
OESDEN_09202 Oesophagostomum dentatum OESDEN_09202 I 0.000
PTRK_0001597400 Parastrongyloides trichosuri PTRK_0001597400 I 0.000
SPAL_0001233100 Strongyloides papillosus SPAL_0001233100 I 0.000
SVE_0753200 Strongyloides venezuelensis SVE_0753200 I 0.000
SVE_1703300 Strongyloides venezuelensis SVE_1703300 I 0.000
TCLT_0000243901 Thelazia callipaeda TCLT_0000243901 I 0.000
TELCIR_05158 Teladorsagia circumcincta TELCIR_05158 I 0.000
dmd-10 Caenorhabditis elegans WBGene00007929 D 0.000
dmd-3 Caenorhabditis elegans WBGene00012832 D 0.000
WBGene00242643 Onchocerca volvulus WBGene00242643 I 0.000
WUBG_11979 Wuchereria bancrofti WUBG_11979 D 0.000