CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo5g126180 *(Brassica oleracea)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	Bo5g126180	T267386_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT3G16350 M01078_2.00	Arabidopsis thaliana	NYTATCYDNN	NNHRGATARN	PBM Sullivan et al.(2014) pTH7149	0.909	1.000
PK29550.1 M02358_2.00	Cannabis sativa	NNHDATCYNN	NNRGATHDNN	PBM Weirauch et al.(2014) pTH9595	0.899	0.957
fgenesh1_pg.scaffold_70000111 M02342_2.00	Physcomitrella patens	NNHNATCBN	NVGATNDNN	PBM Weirauch et al.(2014) pTH8492	0.888	0.936
PK23829.1 M02355_2.00	Cannabis sativa	VTTATCCD	HGGATAAB	PBM Weirauch et al.(2014) pTH9592	0.881	0.915
PK17526.1 M02353_2.00	Cannabis sativa	NNTTATCCAN	NTGGATAANN	PBM Weirauch et al.(2014) pTH9588	0.870	0.872
PK00738.1 M02346_2.00	Cannabis sativa	NYWATCYDNN	NNHRGATWRN	PBM Weirauch et al.(2014) pTH9487	0.850	0.936
KUA1 M02312_2.00	Arabidopsis thaliana	NNTTATCCDN	NHGGATAANN	PBM Weirauch et al.(2014) pTH7647	0.849	0.915
KUA1 M07136_2.00	Arabidopsis thaliana	WWHHTTATCCAHWW	WWDTGGATAADDWW	Dap-seq OMalley et al.(2016) At5g47390_colamp_a	0.849	0.915
KUA1 M07137_2.00	Arabidopsis thaliana	HHWDYHTTATCCAHW	WDTGGATAADRHWDD	Dap-seq OMalley et al.(2016) At5g47390_col_b	0.849	0.915
AT1G19000 M02287_2.00	Arabidopsis thaliana	NYTATCYDNN	NNHRGATARN	PBM Weirauch et al.(2014) pTH7120	0.819	0.851
AT1G19000 M07012_2.00	Arabidopsis thaliana	HDYHTTATCCAHWW	WWDTGGATAADRHD	Dap-seq OMalley et al.(2016) At1g19000_col_a	0.819	0.851
AT1G19000 M07013_2.00	Arabidopsis thaliana	WDYNTTATCCAHWW	WWDTGGATAANRHW	Dap-seq OMalley et al.(2016) At1g19000_colamp_a	0.819	0.851
AT5G61620 M07149_2.00	Arabidopsis thaliana	WWHHTTATCCAHWWN	NWWDTGGATAADDWW	Dap-seq OMalley et al.(2016) AT5G61620_col_a	0.803	0.809
AT5G61620 M07150_2.00	Arabidopsis thaliana	YHTTATCCAHW	WDTGGATAADR	Dap-seq OMalley et al.(2016) AT5G61620_colamp_a	0.803	0.809
AT5G56840 M07144_2.00	Arabidopsis thaliana	WWYMTTATCCAWWWN	NWWWTGGATAAKRWW	Dap-seq OMalley et al.(2016) AT5G56840_col_a	0.778	0.830
AT5G56840 M07145_2.00	Arabidopsis thaliana	HHHWWYHTTATCCWHW	WDWGGATAADRWWDDD	Dap-seq OMalley et al.(2016) AT5G56840_colamp_a	0.778	0.830
0600010132 M02360_2.00	Ostreococcus tauri	NNVTTATCCDNNN	NNNHGGATAABNN	PBM Weirauch et al.(2014) pTH9441	0.772	0.851
AT3G10580 M07072_2.00	Arabidopsis thaliana	AWBCTTATCYWHWHH	DDWDWRGATAAGVWT	Dap-seq OMalley et al.(2016) AT3G10580_col_a	0.769	0.723
AT3G10580 M07073_2.00	Arabidopsis thaliana	CCGAWAAWNTCGGDD	HHCCGANWTTWTCGG	Dap-seq OMalley et al.(2016) AT3G10580_colamp_a	0.769	0.723
AT1G74840 M02291_2.00	Arabidopsis thaliana	NGWTATCCRNN	NNYGGATAWCN	PBM Weirauch et al.(2014) pTH7074	0.750	0.830
AT1G74840 M07037_2.00	Arabidopsis thaliana	HHTTATCCAHW	WDTGGATAADD	Dap-seq OMalley et al.(2016) At1g74840_col100_a	0.750	0.830
AT1G74840 M07038_2.00	Arabidopsis thaliana	HWNHTTATCCAHWW	WWDTGGATAADNWD	Dap-seq OMalley et al.(2016) At1g74840_colamp_a	0.750	0.830
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo5g126180.1	Myb	127	174	GVPWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKYF

Links
Other Myb/SANT family TFs
Other *Brassica oleracea* TFs

597 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30136.m001048	Ricinus communis	30136.m001048	N	0.000
Aquca_022_00282	Aquilegia coerulea	Aquca_022_00282	I	0.000
anac103	Arabidopsis thaliana	AT5G64060	D	0.000
Bo2g009300	Brassica oleracea	Bo2g009300	I	0.000
Bo3g005150	Brassica oleracea	Bo3g005150	N	0.000
Bo3g101690	Brassica oleracea	Bo3g101690	I	0.000
Bo9g174090	Brassica oleracea	Bo9g174090	N	0.000
Bostr.0568s0398	Boechera stricta	Bostr.0568s0398	I	0.000
Bra009379	Brassica rapa	Bra009379	N	0.000
Bra024263	Brassica rapa	Bra024263	I	0.000
Bra028640	Brassica rapa	Bra028640	I	0.000
Cagra.0248s0087	Capsella grandiflora	Cagra.0248s0087	I	0.000
Cagra.1365s0106	Capsella grandiflora	Cagra.1365s0106	N	0.000
Carubv10001139m.g	Capsella rubella	Carubv10001139m.g	N	0.000
Carubv10026643m.g	Capsella rubella	Carubv10026643m.g	I	0.000
cassava2514.valid.m1	Manihot esculenta	cassava2514.valid.m1	I	0.000
cassava2515.valid.m1	Manihot esculenta	cassava2515.valid.m1	I	0.000
cassava43226.valid.m1	Manihot esculenta	cassava43226.valid.m1	N	0.000
cassava43227.valid.m1	Manihot esculenta	cassava43227.valid.m1	N	0.000
Ca_04187	Cicer arietinum	Ca_04187	N	0.000
Ciclev10001200m.g	Citrus clementina	Ciclev10001200m.g	N	0.000
Cucsa.100920	Cucumis sativus	Cucsa.100920	N	0.000
F775_32837	Aegilops tauschii	F775_32837	N	0.000
VNI1	Arabidopsis lyrata	fgenesh2_kg.6__879__AT5G09330.2	N	0.000
anac103	Arabidopsis lyrata	fgenesh2_kg.8__2417__AT5G64060.1	I	0.000
gene27615-v1.0-hybrid	Fragaria vesca	gene27615-v1.0-hybrid	N	0.000
GLYMA04G39140	Glycine max	GLYMA04G39140	N	0.000
GRMZM2G104400	Zea mays	GRMZM2G104400	N	0.000
GSMUA_Achr10G04530_001	Musa acuminata	GSMUA_Achr10G04530_001	N	0.000
GSMUA_Achr11G09000_001	Musa acuminata	GSMUA_Achr11G09000_001	N	0.000
GSMUA_Achr7G23330_001	Musa acuminata	GSMUA_Achr7G23330_001	N	0.000
LjSGA_024981.1	Lotus japonicus	LjSGA_024981.1	N	0.000
mgf025137m	Mimulus guttatus	mgf025137m	N	0.000
orange1.1g036240m.g	Citrus sinensis	orange1.1g036240m.g	N	0.000
Pavir.J02083	Panicum virgatum	Pavir.J02083	N	0.000
Pavir.J07259	Panicum virgatum	Pavir.J07259	N	0.000
PDK_20s1369501g001	Phoenix dactylifera	PDK_20s1369501g001	N	0.000
PGSC0003DMG400028662	Solanum tuberosum	PGSC0003DMG400028662	N	0.000
POPTR_0005s06040	Populus trichocarpa	POPTR_0005s06040	N	0.000
Sb09g020880	Sorghum bicolor	Sb09g020880	N	0.000
Si001354m.g	Setaria italica	Si001354m.g	N	0.000
Solyc11g005920.1	Solanum lycopersicum	Solyc11g005920.1	N	0.000
Thhalv10004501m.g	Eutrema salsugineum	Thhalv10004501m.g	I	0.000
Thhalv10013785m.g	Eutrema salsugineum	Thhalv10013785m.g	N	0.000
Traes_1AL_C4FA8404A	Triticum aestivum	Traes_1AL_C4FA8404A	N	0.000
Traes_1BL_9018AA7BA	Triticum aestivum	Traes_1BL_9018AA7BA	N	0.000
Traes_1DL_F410CF9FD	Triticum aestivum	Traes_1DL_F410CF9FD	N	0.000
TRIUR3_22935	Triticum urartu	TRIUR3_22935	N	0.000
VIT_04s0044g01220	Vitis vinifera	VIT_04s0044g01220	N	0.000

Bo5g126180 (Brassica oleracea) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

597 Related TFs

Bo5g126180 **(Brassica oleracea)
Myb/SANT**