Bra012149 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra012149 T267840_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.909 0.989
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.909 0.989
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.909 0.989
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.833 0.892
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.833 0.892
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.833 0.892
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.833 0.892
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.833 0.892
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.798 0.860
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.798 0.839
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.798 0.839
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.785 0.849
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.684 0.774
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.679 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012149.1-P Myb 6 52
Bra012149.1-P Myb 58 103

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

324 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000736 Ricinus communis 29814.m000736 I 0.694
AC213884.3_FG002 Zea mays AC213884.3_FG002 N
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.719
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.774
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.694
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.757
F3A4.140 Arabidopsis thaliana AT3G50060 D 0.833
MYB44 Arabidopsis thaliana AT5G67300 D 0.909
BGIOSGA018238 Oryza indica BGIOSGA018238 I 0.687
BGIOSGA018239 Oryza indica BGIOSGA018239 I 0.675
Bo2g167960 Brassica oleracea Bo2g167960 I 0.891
Bo7g063830 Brassica oleracea Bo7g063830 I 0.909
Bo7g099180 Brassica oleracea Bo7g099180 I 0.812
Bo8g079430 Brassica oleracea Bo8g079430 I 0.803
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.892
Bostr.6864s0236 Boechera stricta Bostr.6864s0236 I 0.803
Bra012910 Brassica rapa Bra012910 I 0.812
Bra036048 Brassica rapa Bra036048 I 0.780
BRADI2G28910 Brachypodium distachyon BRADI2G28910 N
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.909
Cagra.1549s0005 Capsella grandiflora Cagra.1549s0005 I 0.803
Carubv10019440m.g Capsella rubella Carubv10019440m.g I 0.803
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.909
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.718
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.784
Ca_12468 Cicer arietinum Ca_12468 I 0.689
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.698
Cla004431 Citrullus lanatus Cla004431 I 0.676
Cla020946 Citrullus lanatus Cla020946 I 0.778
Cla022947 Citrullus lanatus Cla022947 I 0.768
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.740
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.678
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.768
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.686
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.770
MYB77 Arabidopsis lyrata fgenesh2_kg.5__1356__AT3G50060.1 I 0.803
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.694
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.745
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.773
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.768
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.758
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.786
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.782
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.716
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.667
GRMZM2G369799 Zea mays GRMZM2G369799 I
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.770
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.766
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.733
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.740
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.775
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.753
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.748
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.667
LPERR05G10150 Leersia perrieri LPERR05G10150 I
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.689
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.738
Lus10014103.g Linum usitatissimum Lus10014103.g I 0.675
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.689
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.685
MDP0000187872 Malus domestica MDP0000187872 I 0.680
mgf014089m Mimulus guttatus mgf014089m I 0.770
mgf020432m Mimulus guttatus mgf020432m I 0.703
mgf023922m Mimulus guttatus mgf023922m I 0.725
MLOC_26177 Hordeum vulgare MLOC_26177 N
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.733
OGLUM05G13590 Oryza glumaepatula OGLUM05G13590 I 0.687
OMERI05G11510 Oryza meridionalis OMERI05G11510 I 0.687
ONIVA05G13470 Oryza nivara ONIVA05G13470 I 0.687
OPUNC05G11020 Oryza punctata OPUNC05G11020 I 0.687
ORUFI05G13850 Oryza rufipogon ORUFI05G13850 I 0.687
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.667
Pavir.Ca02945 Panicum virgatum Pavir.Ca02945 I
Pavir.Cb00156 Panicum virgatum Pavir.Cb00156 I
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.667
Pavir.J33236 Panicum virgatum Pavir.J33236 I 0.661
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.772
PK17282.1 Cannabis sativa PK17282.1 I 0.787
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.735
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.694
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.729
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.674
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.667
Sb09g016570 Sorghum bicolor Sb09g016570 I 0.667
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.909
Si017917m.g Setaria italica Si017917m.g I 0.667
Si024344m.g Setaria italica Si024344m.g I 0.676
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.772
TCM_007138 Theobroma cacao TCM_007138 I 0.782
TCM_042474 Theobroma cacao TCM_042474 I 0.695
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.892
Thhalv10010581m.g Eutrema salsugineum Thhalv10010581m.g I 0.803
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.685