CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA08G40020
(
Glycine max
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
GLYMA08G40020
T271441_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SRM1
M02307_2.00
Arabidopsis thaliana
NNHNATCNN
NNGATNDNN
PBM
Weirauch et al.(2014)
pTH7080
0.717
0.826
SRM1
M07121_2.00
Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a
0.717
0.826
SRM1
M07122_2.00
Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR
Dap-seq
OMalley et al.(2016)
At5g08520_col_b
0.717
0.826
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA08G40020.2
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
GLYMA08G40020.3
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
GLYMA08G40020.4
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
GLYMA08G40020.5
Myb
122
167
AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Glycine max
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30131.m007263
Ricinus communis
30131.m007263
I
0.812
AMTR_s00106p00065610
Amborella trichopoda
AMTR_s00106p00065610
N
0.672
Aquca_035_00057
Aquilegia coerulea
Aquca_035_00057
I
0.818
Aquca_072_00078
Aquilegia coerulea
Aquca_072_00078
N
0.680
SRM1
Arabidopsis thaliana
AT5G08520
D
0.717
Bo9g174380
Brassica oleracea
Bo9g174380
I
0.669
Bostr.13129s0103
Boechera stricta
Bostr.13129s0103
I
0.705
Cagra.1365s0066
Capsella grandiflora
Cagra.1365s0066
I
0.717
Carubv10001525m.g
Capsella rubella
Carubv10001525m.g
I
0.717
cassava18614.valid.m1
Manihot esculenta
cassava18614.valid.m1
I
0.825
Ca_05454
Cicer arietinum
Ca_05454
I
0.695
Ca_14522
Cicer arietinum
Ca_14522
N
0.693
Ca_19000
Cicer arietinum
Ca_19000
I
0.760
Ciclev10032259m.g
Citrus clementina
Ciclev10032259m.g
I
0.851
Cla009230
Citrullus lanatus
Cla009230
I
0.819
Cla020348
Citrullus lanatus
Cla020348
I
0.776
Cucsa.013870
Cucumis sativus
Cucsa.013870
I
0.819
Cucsa.280970
Cucumis sativus
Cucsa.280970
I
0.794
Eucgr.G02591
Eucalyptus grandis
Eucgr.G02591
I
0.775
Eucgr.J00349
Eucalyptus grandis
Eucgr.J00349
N
0.769
evm.TU.supercontig_138.5
Carica papaya
evm.TU.supercontig_138.5
I
0.821
e_gw1.256.18.1
Physcomitrella patens
e_gw1.256.18.1
N
0.669
fgenesh2_kg.6__825__AT5G08520.1
Arabidopsis lyrata
fgenesh2_kg.6__825__AT5G08520.1
I
0.712
gene00786-v1.0-hybrid
Fragaria vesca
gene00786-v1.0-hybrid
N
0.721
GLYMA07G28310
Glycine max
GLYMA07G28310
I
0.822
GLYMA10G42450
Glycine max
GLYMA10G42450
I
0.665
GLYMA18G18140
Glycine max
GLYMA18G18140
I
0.893
GLYMA20G01450
Glycine max
GLYMA20G01450
I
0.828
GLYMA20G24600
Glycine max
GLYMA20G24600
I
0.665
Gorai.005G212900
Gossypium raimondii
Gorai.005G212900
I
0.841
Gorai.006G063000
Gossypium raimondii
Gorai.006G063000
I
0.671
Gorai.008G147400
Gossypium raimondii
Gorai.008G147400
I
0.841
Gorai.012G135600
Gossypium raimondii
Gorai.012G135600
I
0.816
Gorai.013G067600
Gossypium raimondii
Gorai.013G067600
I
0.832
GRMZM2G149958
Zea mays
GRMZM2G149958
I
0.669
GSMUA_Achr10G06880_001
Musa acuminata
GSMUA_Achr10G06880_001
N
0.708
GSMUA_Achr1G17730_001
Musa acuminata
GSMUA_Achr1G17730_001
I
0.793
GSMUA_Achr9G20620_001
Musa acuminata
GSMUA_Achr9G20620_001
I
0.785
GSMUA_Achr9G23760_001
Musa acuminata
GSMUA_Achr9G23760_001
I
0.756
gw1.13.182.1
Physcomitrella patens
gw1.13.182.1
N
0.665
Lus10013447.g
Linum usitatissimum
Lus10013447.g
I
0.763
Lus10041001.g
Linum usitatissimum
Lus10041001.g
N
0.749
MDP0000289018
Malus domestica
MDP0000289018
I
0.663
mgf009460m
Mimulus guttatus
mgf009460m
I
0.743
MTR_1g111830
Medicago truncatula
MTR_1g111830
I
0.675
MTR_8g063600
Medicago truncatula
MTR_8g063600
N
0.670
OB04G36550
Oryza brachyantha
OB04G36550
N
0.663
orange1.1g022439m.g
Citrus sinensis
orange1.1g022439m.g
I
0.851
Pavir.Ga00233
Panicum virgatum
Pavir.Ga00233
N
0.693
Pavir.Gb00055
Panicum virgatum
Pavir.Gb00055
N
0.703
PGSC0003DMG400025303
Solanum tuberosum
PGSC0003DMG400025303
I
0.742
PK13672.1
Cannabis sativa
PK13672.1
I
0.770
Pm006046
Prunus mume
Pm006046
I
0.779
Pm017050
Prunus mume
Pm017050
I
0.688
PRUPE_ppa009396mg
Prunus persica
PRUPE_ppa009396mg
I
0.817
PRUPE_ppa010926mg
Prunus persica
PRUPE_ppa010926mg
I
0.688
SapurV1A.0234s0050
Salix purpurea
SapurV1A.0234s0050
I
0.836
SapurV1A.0333s0040
Salix purpurea
SapurV1A.0333s0040
I
0.770
Sb06g032880
Sorghum bicolor
Sb06g032880
N
0.669
Si022762m.g
Setaria italica
Si022762m.g
N
0.698
Solyc04g008870.2
Solanum lycopersicum
Solyc04g008870.2
N
0.707
TCM_007672
Theobroma cacao
TCM_007672
I
0.841
Thhalv10014203m.g
Eutrema salsugineum
Thhalv10014203m.g
I
0.717
VIT_10s0071g00660
Vitis vinifera
VIT_10s0071g00660
I
0.825