GLYMA18G18140 (Glycine max)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 GLYMA18G18140 T271739_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.717 0.826
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.717 0.826
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.717 0.826
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA18G18140.2 Myb 122 167
GLYMA18G18140.3 Myb 122 167
GLYMA18G18140.4 Myb 122 167
GLYMA18G18140.5 Myb 122 167
GLYMA18G18140.6 Myb 122 167
GLYMA18G18140.7 Myb 122 167

Links

Other Myb/SANT family TFs
Other Glycine max TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30131.m007263 Ricinus communis 30131.m007263 I 0.812
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.672
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.818
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.680
SRM1 Arabidopsis thaliana AT5G08520 D 0.717
Bo9g174380 Brassica oleracea Bo9g174380 I 0.669
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.705
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.717
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.717
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.825
Ca_05454 Cicer arietinum Ca_05454 I 0.710
Ca_14522 Cicer arietinum Ca_14522 N 0.678
Ca_19000 Cicer arietinum Ca_19000 I 0.744
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.851
Cla009230 Citrullus lanatus Cla009230 I 0.819
Cla020348 Citrullus lanatus Cla020348 I 0.776
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.819
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.794
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.775
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.769
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.821
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.669
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.712
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.721
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.807
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.893
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.680
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.812
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.680
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.825
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.671
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.825
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.816
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.816
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.669
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.708
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.793
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.785
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.756
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.665
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.763
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.749
MDP0000289018 Malus domestica MDP0000289018 I 0.663
mgf009460m Mimulus guttatus mgf009460m I 0.728
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.690
OB04G36550 Oryza brachyantha OB04G36550 N 0.663
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.851
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.693
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.703
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.742
PK13672.1 Cannabis sativa PK13672.1 I 0.770
Pm006046 Prunus mume Pm006046 I 0.779
Pm017050 Prunus mume Pm017050 I 0.688
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.817
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.688
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.836
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.770
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.669
Si022762m.g Setaria italica Si022762m.g N 0.698
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.707
TCM_007672 Theobroma cacao TCM_007672 I 0.825
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.717
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.825