PGSC0003DMG400025303 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400025303 T277676_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.669 0.796
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.669 0.796
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.669 0.796
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400065102 Myb 9 57
PGSC0003DMT400065102 Myb 120 167

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30131.m007263 Ricinus communis 30131.m007263 I 0.766
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.731
SRM1 Arabidopsis thaliana AT5G08520 D 0.669
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.670
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.669
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.669
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.789
Ca_19000 Cicer arietinum Ca_19000 I 0.732
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.741
Cla009230 Citrullus lanatus Cla009230 I 0.714
Cla020348 Citrullus lanatus Cla020348 I 0.788
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.714
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.806
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.775
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.712
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.773
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.679
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.664
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.666
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.761
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.742
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.742
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.766
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.789
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.789
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.750
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.789
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.693
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.736
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.750
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.709
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.705
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.756
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.751
mgf009460m Mimulus guttatus mgf009460m I 0.690
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.664
OB04G36550 Oryza brachyantha OB04G36550 N 0.668
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.741
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.708
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.697
PK13672.1 Cannabis sativa PK13672.1 I 0.723
Pm006046 Prunus mume Pm006046 I 0.721
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.760
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.800
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.713
Si022762m.g Setaria italica Si022762m.g N 0.705
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.874
TCM_007672 Theobroma cacao TCM_007672 I 0.789
TCM_041160 Theobroma cacao TCM_041160 I 0.661
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.669
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.789