POPTR_0008s06450 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0008s06450 T278338_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.801 0.851
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.801 0.851
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.801 0.851
AT5G05790
M07119_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g05790_col_a 		0.672 0.809
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.665 0.777
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.665 0.777
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s06450.1 Myb 110 157

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29610.m000410 Ricinus communis 29610.m000410 I 0.805
29681.m001296 Ricinus communis 29681.m001296 I 0.681
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.662
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.801
AT5G05790 Arabidopsis thaliana AT5G05790 D 0.672
Bo1g141120 Brassica oleracea Bo1g141120 I 0.784
Bo5g136680 Brassica oleracea Bo5g136680 I 0.801
Bo9g176900 Brassica oleracea Bo9g176900 I 0.713
Bostr.13129s0394 Boechera stricta Bostr.13129s0394 I 0.672
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.790
Bra009134 Brassica rapa Bra009134 I 0.713
Bra034173 Brassica rapa Bra034173 I 0.801
Bra034853 Brassica rapa Bra034853 I 0.790
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.790
Cagra.5131s0007 Capsella grandiflora Cagra.5131s0007 I 0.672
Carubv10001695m.g Capsella rubella Carubv10001695m.g I 0.672
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.790
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.817
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.817
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.665
Ca_12513 Cicer arietinum Ca_12513 I 0.748
Ca_19327 Cicer arietinum Ca_19327 I 0.661
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.677
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.698
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.780
Cla004397 Citrullus lanatus Cla004397 I 0.737
Cla013553 Citrullus lanatus Cla013553 I 0.707
Cla018399 Citrullus lanatus Cla018399 I 0.682
Cucsa.067080 Cucumis sativus Cucsa.067080 I 0.676
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.707
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.748
Eucgr.G03029 Eucalyptus grandis Eucgr.G03029 I 0.663
Eucgr.J01940 Eucalyptus grandis Eucgr.J01940 I 0.664
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.670
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.665
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.759
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.724
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.801
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.669
gene20912-v1.0-hybrid Fragaria vesca gene20912-v1.0-hybrid I 0.726
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.735
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.665
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.739
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.735
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.739
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.665
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.665
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.665
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.676
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.794
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.661
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.754
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.726
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.730
MDP0000142580 Malus domestica MDP0000142580 I 0.683
MDP0000221993 Malus domestica MDP0000221993 I 0.699
MDP0000277813 Malus domestica MDP0000277813 I 0.773
MDP0000809640 Malus domestica MDP0000809640 I 0.743
mgf010347m Mimulus guttatus mgf010347m I 0.714
mgf022442m Mimulus guttatus mgf022442m I 0.698
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.727
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.661
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.677
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.698
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.797
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.689
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I 0.723
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.781
PK15104.1 Cannabis sativa PK15104.1 I 0.783
PK27213.1 Cannabis sativa PK27213.1 D 0.665
Pm002536 Prunus mume Pm002536 I 0.683
Pm018878 Prunus mume Pm018878 I 0.777
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.718
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.703
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.834
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.667
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.683
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.777
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.664
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.664
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.834
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.838
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.676
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.676
scaffold_600551.1 Arabidopsis lyrata scaffold_600551.1 I 0.672
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.744
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.781
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.689
TCM_021750 Theobroma cacao TCM_021750 I 0.665
TCM_041672 Theobroma cacao TCM_041672 I 0.693
TCM_042604 Theobroma cacao TCM_042604 I 0.748
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.801
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.683
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.789