POPTR_0011s17060 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0011s17060 T278414_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB80
M07142_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MS188_col_a 		0.841 0.935
MYB80
M07143_2.00 		Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR		 Dap-seq
OMalley et al.(2016)
MS188_colamp_a 		0.841 0.935
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s17060.1 Myb 14 61
POPTR_0011s17060.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10003405 Chelonia mydas Cmyd_10003405 I
RREB1 Anolis carolinensis ENSACAG00000000520 I
ENSAMEG00000017412 Ailuropoda melanoleuca ENSAMEG00000017412 I
RREB1 Canis familiaris ENSCAFG00000009527 I
ENSCSAG00000007376 Chlorocebus sabaeus ENSCSAG00000007376 I
RREB1 Felis catus ENSFCAG00000030069 I
RREB1 Homo sapiens ENSG00000124782 D
RREB1 Gorilla gorilla ENSGGOG00000004561 I
RREB1 Loxodonta africana ENSLAFG00000005300 I
ENSMEUG00000015377 Macropus eugenii ENSMEUG00000015377 I
RREB1 Macaca mulatta ENSMMUG00000007852 I
RREB1 Monodelphis domestica ENSMODG00000009892 I
ENSMPUG00000000558 Mustela putorius furo ENSMPUG00000000558 I
Rreb1 Mus musculus ENSMUSG00000039087 I
ENSNLEG00000011554 Nomascus leucogenys ENSNLEG00000011554 I
ENSOCUG00000022117 Oryctolagus cuniculus ENSOCUG00000022117 N
ENSP00000369270 Macaca fascicularis ENSP00000369270 I
ENSPANG00000019553 Papio anubis ENSPANG00000019553 I
ENSPPYG00000016204 Pongo abelii ENSPPYG00000016204 I
RREB1 Pan troglodytes ENSPTRG00000017697 I
RREB1 Pteropus vampyrus ENSPVAG00000014081 I
Rreb1 Rattus norvegicus ENSRNOG00000015701 I
Tal_R000474 Tyto alba Tal_R000474 N